PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g019911m
Common NameCISIN_1g019911mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 335aa    MW: 37625.9 Da    PI: 7.4325
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g019911mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.2e-173077148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT eEd +l++++  +G g+W+  ar+ g++Rt+k+c++rw++yl
  orange1.1g019911m 30 RGPWTVEEDFKLINYISNHGEGRWNCLARCAGLKRTGKSCRLRWLNYL 77
                       89********************************************97 PP
2Myb_DNA-binding49.41.1e-1583126146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+ T eE++ +++++ ++G++ W++Ia++++ gRt++++k++w++
  orange1.1g019911m  83 RGNITLEEQLMILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 126
                        7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.6172577IPR017930Myb domain
SuperFamilySSF466891.8E-3027124IPR009057Homeodomain-like
SMARTSM007172.2E-132979IPR001005SANT/Myb domain
PfamPF002494.2E-153077IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-223184IPR009057Homeodomain-like
CDDcd001671.00E-103277No hitNo description
PROSITE profilePS5129422.70778132IPR017930Myb domain
SMARTSM007172.6E-1482130IPR001005SANT/Myb domain
PfamPF002492.1E-1483126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-2385131IPR009057Homeodomain-like
CDDcd001674.14E-1187126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEVKGRACRS KGNSKSSSTT ISEEDLDLRR GPWTVEEDFK LINYISNHGE GRWNCLARCA  60
GLKRTGKSCR LRWLNYLRPD VRRGNITLEE QLMILELHSR WGNRWSKIAQ HLPGRTDNEI  120
KNYWRTRVQK HAKQLKCDVN SKQFKDTMRY LWMPRLIERI QANKASAAPA ATATPIATTG  180
ATSGSFTTAP IDEPASRFFN NIDVGTEQMV MQPLNCSSQV TTSQITTCHY TPENSSTGAS  240
SDSFGTQVSS VSDLAEYYAI PVNNNTNPDY FQSHVGFAES SLISPTGYFN PGIDFQSAFE  300
ANNQMMDGGD ASDNLWNMNV DELWSLQQQF NTNM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26271304106B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed specifically in flowers. Restricted to anthers in maturing flowers. Strongest expression in the vascular and connective tissue where the anther attaches to the filament. Not detected in pollen. {ECO:0000269|PubMed:19091873}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor contributing to the regulation of stamen maturation and male fertility in response to jasmonate signaling. Required for correct timing of anther dehiscence. Acts as a negative regulator of abscisic acid-induced cell death. Not involved in the regulation of BOI. Regulated by MYB21 and at a lower level by MYB24. Negatively regulated by the proteasome in an SCF(COI1) E3 ubiquitin-protein ligase complex-dependent manner. {ECO:0000269|PubMed:14555693, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:20921156, ECO:0000269|PubMed:23952703}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by jasmonate and pathogen infection. {ECO:0000269|PubMed:14555693, ECO:0000269|PubMed:19091873}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006419304.10.0transcription factor MYB108
SwissprotQ9LDE14e-89MY108_ARATH; Transcription factor MYB108
TrEMBLA0A067FXC20.0A0A067FXC2_CITSI; Uncharacterized protein
STRINGXP_006419304.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-87myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cheng HQ, et al.
    The cotton MYB108 forms a positive feedback regulation loop with CML11 and participates in the defense response against Verticillium dahliae infection.
    J. Exp. Bot., 2016. 67(6): p. 1935-50
    [PMID:26873979]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Chou ML, et al.
    The Direct Involvement of Dark-Induced Tic55 Protein in Chlorophyll Catabolism and Its Indirect Role in the MYB108-NAC Signaling Pathway during Leaf Senescence in Arabidopsis thaliana.
    Int J Mol Sci, 2018.
    [PMID:29937503]