PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g019887m | ||||||||
Common Name | CISIN_1g019887mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 335aa MW: 37202 Da PI: 6.3565 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 4.7e-19 | 84 | 132 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a+++ ++k++g orange1.1g019887m 84 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDKEARKIRG 132 9*******.**********954...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.802 | 83 | 140 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-32 | 83 | 141 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-22 | 83 | 141 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.3E-37 | 83 | 146 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-11 | 84 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.1E-12 | 84 | 95 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.30E-33 | 84 | 141 | No hit | No description |
PRINTS | PR00367 | 9.1E-12 | 106 | 122 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MCGGSILGDF FPRHGGSRVT ASDLWPNSPF AATKQLPHNF ESTPFSDEHQ SLAKIKRPQP 60 PSYLNSCSAS GDEKKPKRQR KNLYRGIRQR PWGKWAAEIR DPRKGVRVWL GTFNTAEEAA 120 RAYDKEARKI RGKKAKVNFP NEEDVFTVTP AAAAHAYHHH QHNHNPTPSP LPSLSQEDLF 180 SRNNSSISSV GFDLYGYDLN PQIVTSGGDE NSGTGSGSVS EGGYDSTELM LNCNQNVNDG 240 SFAQMKVKAE EQEEEEKRKA EEEENEVRKL SEELMAYENF MKFYQLPYLD GQSPVSNNNN 300 NNININIVHE GVVGNLWSFD DVTVAPAPAN SKAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-22 | 84 | 140 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 1e-21 | 84 | 142 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 74 | 79 | KPKRQR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.8967 | 0.0 | seed |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ544916 | 0.0 | FJ544916.1 Citrus unshiu putative ethylene responsive element binding protein 3 (EREBP3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015386177.1 | 0.0 | ethylene-responsive transcription factor ERF073-like | ||||
TrEMBL | A0A067H846 | 0.0 | A0A067H846_CITSI; Uncharacterized protein | ||||
STRING | XP_006444410.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 3e-39 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g019887m |