PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g019806m
Common NameCISIN_1g019782mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YA
Protein Properties Length: 336aa    MW: 36545.8 Da    PI: 8.5748
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g019806mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1032.8e-32187243158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        dep+YVNaKQy++Il+RRq Rakle+++kl  k+rkpylheSRh hA++R+RgsgGrF
  orange1.1g019806m 187 DEPIYVNAKQYRAILRRRQYRAKLEAQNKL-VKGRKPYLHESRHAHAMNRARGSGGRF 243
                        79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.5E-36185246IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.927186246IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.8E-27188243IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.1E-23189211IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860191211IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.1E-23220243IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MPNLFSKDSG ISSACSASMN GVSGPLWGSS SESVVQQSSM SGCLSLKMAV PRQQFANTKQ  60
LSFQFQDQES SSTQSTGQSC SKEACVKDDN PSRQSVVSAP PGFNGIHVKP VGGHSKLASS  120
MGPHDFVFTP PHVDYNQSVA PFQLHYAEPY FSGLLSPFLP PQAMIHHPQM MGMAPARVPL  180
PLELAEDEPI YVNAKQYRAI LRRRQYRAKL EAQNKLVKGR KPYLHESRHA HAMNRARGSG  240
GRFLNTKKVP ESKRNLTNNE LDMSESEAHR ENYKDGGSTT SCSDITSASN SEDIFQQPEF  300
GFSGYSSIGS RSMQGCSATM NGDGNIHRFL SSVDG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-20187247262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.40720.0callus| fruit| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015387791.10.0nuclear transcription factor Y subunit A-3 isoform X2
TrEMBLA0A067FNT60.0A0A067FNT6_CITSI; Uncharacterized protein
STRINGXP_006465957.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.13e-69nuclear factor Y, subunit A3