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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
orange1.1g019803m |
Common Name | CISIN_1g018368mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family |
BBR-BPC |
Protein Properties |
Length: 336aa MW: 37269.1 Da PI: 9.9379 |
Description |
BBR-BPC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
orange1.1g019803m | genome | ICGC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GAGA_bind | 387.8 | 1.6e-118 | 1 | 335 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllall 85
mdd g+re r+k+ +y+ a + l +++ +q+m+++aerda+++ernla sekkaa+aerdmaflqrd+a+aern+a++erdn++++l+
orange1.1g019803m 1 MDDGGHREngRHKAdQYKAAqgQWLMHHQpsMKQIMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILERDNAIASLQ 92
9*****999*****99*9544433433331145*********************************************************** PP
GAGA_bind 86 lvensla...salpvgvqvlsgtksidslqqlse..pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkse 172
++ensl s++p+g+q+++g+k++++ qq+ + +++++ a+ re+++ +alp++ a+ea + ++ k r +ke+k +++kk++
orange1.1g019803m 93 YRENSLGgnmSSCPPGCQISRGVKHMHHPQQHVHqlHHVSEAAYS-REMHTGDALPVSPGASEAAKPRRYK---R---AKEPKVLSPNKKTA 177
****9878889********************55545555565555.**********988666665555554...4...44444445555555 PP
GAGA_bind 173 kskkkvkkesader.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCC 235
ks +kvk+e++d + sk+++k + l+ln+v++Dest+P+P+CsCtG+lrqCYkWGnGGWqSaCC
orange1.1g019803m 178 KSPRKVKRENEDLNkvvfgkpsewksvqdldggdddvnkqstaSKSDWKGQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACC 269
6667777777664447788889999******************************************************************* PP
GAGA_bind 236 tttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
tt++S+yPLP+++++r+aR++grKmS++af+klL +LaaeG+dls+pvDLkdhWAkHGtn+++ti+
orange1.1g019803m 270 TTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 335
*****************************************************************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009723 | Biological Process | response to ethylene |
GO:0005730 | Cellular Component | nucleolus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 336 aa
Download sequence Send
to blast |
MDDGGHRENG RHKADQYKAA QGQWLMHHQP SMKQIMTIMA ERDAALQERN LATSEKKAAI 60 AERDMAFLQR DTAIAERNNA ILERDNAIAS LQYRENSLGG NMSSCPPGCQ ISRGVKHMHH 120 PQQHVHQLHH VSEAAYSREM HTGDALPVSP GASEAAKPRR YKRAKEPKVL SPNKKTAKSP 180 RKVKRENEDL NKVVFGKPSE WKSVQDLDGG DDDVNKQSTA SKSDWKGQVL GLNQVTFDES 240 TMPPPACSCT GVLRQCYKWG NGGWQSACCT TSLSMYPLPA VPNKRHARVG GRKMSGSAFN 300 KLLTRLAAEG HDLSHPVDLK DHWAKHGTNR YITIK*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |