PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g019764m
Common NameCISIN_1g019764mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YA
Protein Properties Length: 337aa    MW: 36768.1 Da    PI: 9.9561
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g019764mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA51.33.7e-16149187140
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylh 40 
                        +ep+YVNaKQy++Il+RRq+Rak+e ekk+ +k+rk   h
  orange1.1g019764m 149 EEPVYVNAKQYRGILRRRQSRAKAELEKKV-IKARKVTFH 187
                        69****************************.999998877 PP
2CBFB_NFYA43.11.4e-132122343658
          CBFB_NFYA  36 kpylheSRhkhAlrRpRgsgGrF 58 
                        +pylheSRh+hA+rR+Rg+gGrF
  orange1.1g019764m 212 QPYLHESRHQHAMRRARGCGGRF 234
                        8*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.9E-27147237IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115231.827148237IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.0E-26150234IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860153173IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MMPAKPDENR QLDRGAQSVS QSAIYSQRPW WSGTGTGASL AEAAAPKSSR EQPNGSVVNG  60
ATYSQDGING QEHAHLKHIP SSTPLTMGER LEQNSQMELV GHSIVLTSYP YTDPQHVGVI  120
TPYVPQAMIP PQLYGMHQAR MPLPLEMEEE PVYVNAKQYR GILRRRQSRA KAELEKKVIK  180
ARKVTFHSLK GATIFYNKTL QGLDTYALFS LQPYLHESRH QHAMRRARGC GGRFLNTKKL  240
NDNAANSAEK GMNSGADSSK GSTNGTGSVD SSIVQQERAM EENAHMEHTS SNSNSNNRSL  300
LSMYNTSSGS VEGNFLGQQR GSMQGNGAPR GALPVK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.71880.0callus| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150392e-38AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439109.10.0nuclear transcription factor Y subunit A-4
RefseqXP_006482871.10.0nuclear transcription factor Y subunit A-4-like
TrEMBLA0A067H7670.0A0A067H767_CITSI; Uncharacterized protein
STRINGXP_006482871.10.0(Citrus sinensis)
STRINGXP_006439109.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM160191014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.45e-31nuclear factor Y, subunit A1