PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g019737m | ||||||||
Common Name | CISIN_1g019737mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | WRKY | ||||||||
Protein Properties | Length: 337aa MW: 37636.5 Da PI: 4.9936 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.8 | 5.3e-29 | 122 | 181 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 +Dgy+WrKYGqK++ g+++prsYYrCt++ +C+++k+v+rs+edp+++e+tY+g+H++ orange1.1g019737m 122 EDGYSWRKYGQKDILGAKYPRSYYRCTYRntqNCWATKQVQRSDEDPSTFEVTYRGTHTC 181 7***************************98899*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 21.953 | 116 | 179 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.2E-28 | 117 | 181 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.22E-25 | 120 | 181 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-38 | 121 | 183 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.4E-27 | 122 | 181 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MENAWRMEQK TLISELTEGM ELAKQLRVNL GSAETSEVLL RRILSSYEKA LLILNWSGSM 60 GQAQASGVPP ESPISINGSP RSEDFDGALK DNQDSSKKRK TLPRRTDKVK VSFESGLEGP 120 FEDGYSWRKY GQKDILGAKY PRSYYRCTYR NTQNCWATKQ VQRSDEDPST FEVTYRGTHT 180 CFNGSQSVPQ PASPEKHEHK LNHHSDNHQK GSGINNEYLD NKEIASPFSF PTSSLGCMKS 240 NDYCFSSLML DENNFLGGFS SSFIPPAAAE SNFYYISQNQ MNFGDVHNLQ QSESELPELQ 300 SANNSVANSP ILNLDFSIDA AELDSNFPFD NAGFSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 7e-20 | 121 | 181 | 8 | 68 | OsWRKY45 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.5389 | 0.0 | fruit| root |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006439376.1 | 0.0 | probable WRKY transcription factor 53 | ||||
TrEMBL | A0A067GMD4 | 0.0 | A0A067GMD4_CITSI; Uncharacterized protein | ||||
STRING | XP_006439376.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1933 | 27 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 1e-66 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g019737m |