PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g019625m
Common NameCISIN_1g019574mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 339aa    MW: 36772.9 Da    PI: 6.9182
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g019625mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000442042421255
                        HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  orange1.1g019625m 204 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 242
                        6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.179192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-10202256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-7202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.07E-5202246No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MMAGNPSWWS MHPLNPHQLS SSSSPSLFPS QYVHGSSSSF PFNSLPDSQD QHPQSWSQLL  60
LGLPSDDDGF NSTPIGHFHQ PKKFESWEDH HLQIINPYSS SGVDVVDDVK QEAPQANNLY  120
LHGAGEFQAT AASNWPQIMP LSPRSCVTSL SSNILDFSHT KPADKKNNQQ HPDHSSECNS  180
TATRGVSKKA RVQTPSSQTP LKVRKEKLGD RITALHQLVS PFGKTDTASV LLEAIGYIRF  240
LQGQIEALSS PYLSTSPSAS MRNQHCVHGD INGAFPEAPG QLLNDTCLKR KEAPNQDGQG  300
KPKDLRSRGL CLVPLSCTQQ IGSDNGADFW APALGGGF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.168800.0stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0938727e-35BT093872.1 Soybean clone JCVI-FLGm-24O24 unknown mRNA.
GenBankBT1450107e-35BT145010.1 Lotus japonicus clone JCVI-FLLj-18O21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006465638.10.0transcription factor bHLH68-like
SwissprotQ8S3D11e-68BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A067ESR70.0A0A067ESR7_CITSI; Uncharacterized protein
STRINGXP_006465638.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.14e-63bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]