PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g019617m | ||||||||
Common Name | CISIN_1g012387mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 339aa MW: 36949.2 Da PI: 8.9577 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.9 | 1e-09 | 295 | 320 | 5 | 30 |
HHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 5 hnerErrRRdriNsafeeLrellPka 30 hn+ Er+RRd+iN+++ +L++l+P++ orange1.1g019617m 295 HNQSERKRRDKINQRMKTLQKLVPNS 320 9***********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.95E-9 | 288 | 322 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.817 | 290 | 338 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-9 | 294 | 321 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-7 | 295 | 320 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.34E-7 | 295 | 327 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MSQCVPSWDL DENYPNNCRA SLRSRSNSTA PDVPMLELDY EVAELTWENG QLAMHGLGPP 60 RVPAKAAANN PSPTKNTCSG TLESIVNQAT SLPQAQRNGK PPLLDEFATA PCCFHQQRPS 120 MTTMDALVPC SNRRSEERTT QVMDPAPRVG GTRSIRVGSC SGPVPLPIPD STKDDDVLNG 180 KRARVARVPV APEWSSRDQS FSGSATFGRE SQRVSVTHDT YDMDMDMGVG FTGTSMGSPE 240 NTSSAKQGNK ATTADDHDSV CHSRPLREAG DEEYKKKGNG KSTISTKRSR AAAIHNQSER 300 KRRDKINQRM KTLQKLVPNS SKVRSLTGCY SLSYPRTF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 298 | 303 | ERKRRD |
2 | 299 | 304 | RKRRDK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00034 | PBM | Transfer from AT4G00050 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006445332.1 | 0.0 | transcription factor UNE10 | ||||
Refseq | XP_006490847.1 | 0.0 | transcription factor UNE10 | ||||
Swissprot | Q8GZ38 | 7e-75 | UNE10_ARATH; Transcription factor UNE10 | ||||
TrEMBL | A0A067H157 | 0.0 | A0A067H157_CITSI; Uncharacterized protein | ||||
STRING | XP_006490847.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006445332.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 3e-77 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g019617m |
Publications ? help Back to Top | |||
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