PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g019587m
Common NameCISIN_1g019587mg, LOC102619365
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 339aa    MW: 37887 Da    PI: 7.3272
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g019587mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.8e-05174193120
                        EEETTTTEEESSHHHHHHHH CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                        ++Cp C k+F+r  n++ H+
  orange1.1g019587m 174 FSCPLCFKTFNRYNNMQMHM 193
                        89*****************9 PP
2zf-C2H212.50.00044258280123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C +C+k F  + + ++H +++
  orange1.1g019587m 258 FMCRKCSKAFAVRGDWRTHEKNC 280
                        89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66174201IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-5174193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280176196IPR007087Zinc finger, C2H2
SuperFamilySSF576674.35E-6239278No hitNo description
Gene3DG3DSA:3.30.160.606.0E-5245278IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MADPYSNYFN GWLNFAALQH SSSSNNSSSN YYTPFAFNIY SSNNNNNNFC THYHQYSSPP  60
SPPLKEALPL LSLSPARHDG IVKADESSCS VMDTEESSAA YCDDHHESAS LTVSLHLGLA  120
ESSSADLISD YNNDNNNKEE VVTIASGRGG GCSLNKGQYW IPTPAQILIG PTQFSCPLCF  180
KTFNRYNNMQ MHMWGHGSQY RKGPESLRGS QPTAMLRLPC YCCAPGCRNN IDHPRSKPLK  240
DFRTLQTHYK RKHGIKPFMC RKCSKAFAVR GDWRTHEKNC GKLWYCTCGS DFKHKRSLKD  300
HIKAFGNGHA SCGIDTFEDD EPASEIEQDN NESSRDID*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446092.10.0zinc finger protein WIP2
RefseqXP_006470583.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-133ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A067F1P90.0A0A067F1P9_CITSI; Uncharacterized protein
TrEMBLA0A2H5P4940.0A0A2H5P494_CITUN; Uncharacterized protein
TrEMBLV4U0D10.0V4U0D1_9ROSI; Uncharacterized protein
STRINGXP_006470583.10.0(Citrus sinensis)
STRINGXP_006446092.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-131C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]