PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g019574m | ||||||||
Common Name | CISIN_1g019574mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 340aa MW: 36859.9 Da PI: 6.9182 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.8 | 0.00044 | 205 | 243 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq orange1.1g019574m 205 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 243 6677889999999999998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.179 | 193 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-10 | 203 | 257 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.08E-5 | 203 | 247 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.3E-7 | 203 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 340 aa Download sequence Send to blast |
MMAGNPSWWS MHPLNPHQLS SSSSPSLFPS QYVHGSSSSF PFNSLPDSQD QHPQSWSQLL 60 LSGLPSDDDG FNSTPIGHFH QPKKFESWED HHLQIINPYS SSGVDVVDDV KQEAPQANNL 120 YLHGAGEFQA TAASNWPQIM PLSPRSCVTS LSSNILDFSH TKPADKKNNQ QHPDHSSECN 180 STATRGVSKK ARVQTPSSQT PLKVRKEKLG DRITALHQLV SPFGKTDTAS VLLEAIGYIR 240 FLQGQIEALS SPYLSTSPSA SMRNQHCVHG DINGAFPEAP GQLLNDTCLK RKEAPNQDGQ 300 GKPKDLRSRG LCLVPLSCTQ QIGSDNGADF WAPALGGGF* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Csi.16880 | 0.0 | stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT093872 | 7e-35 | BT093872.1 Soybean clone JCVI-FLGm-24O24 unknown mRNA. | |||
GenBank | BT145010 | 7e-35 | BT145010.1 Lotus japonicus clone JCVI-FLLj-18O21 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006465638.1 | 0.0 | transcription factor bHLH68-like | ||||
Swissprot | Q8S3D1 | 1e-68 | BH068_ARATH; Transcription factor bHLH68 | ||||
TrEMBL | A0A067F161 | 0.0 | A0A067F161_CITSI; Uncharacterized protein | ||||
STRING | XP_006465638.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1872 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G29100.1 | 3e-63 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g019574m |
Publications ? help Back to Top | |||
---|---|---|---|
|