PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g019485m | ||||||||
Common Name | CISIN_1g019485mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 341aa MW: 37961.7 Da PI: 5.6211 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 53.5 | 4.3e-17 | 45 | 93 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r +h+e E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L +++eYI+ L orange1.1g019485m 45 RSKHSETEQRRRSKINERFQMLRDLIPQN----DQKRDKASFLLEVIEYIQFL 93 899*************************9....9*****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.5E-23 | 41 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-19 | 43 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.18 | 43 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.61E-17 | 45 | 98 | No hit | No description |
Pfam | PF00010 | 1.6E-14 | 45 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.7E-13 | 49 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 341 aa Download sequence Send to blast |
MVKSSNNHLE EDEEADLYDK HVNRNNSSSY KGEGKSSEQK ATTHRSKHSE TEQRRRSKIN 60 ERFQMLRDLI PQNDQKRDKA SFLLEVIEYI QFLREKLQMY EGPYQGWTQE PTKLTPWRSH 120 NGPAETYMDQ SQVIKNGSGH ENNVINPGML PNPQNSMESD LDTAAAYKAT DFSPGSATTM 180 VPQNMHAQQN MFAPVGRGGM PTQPLQESVS DVENMVYQPQ TQLWQGRSCA TECAVPNGAL 240 NDQDLMIESG SSSMSNAYSQ GILNALTQAL RSSGVDLSQA SVSVQIDVGK RANDGSTAMA 300 SSSKDNDSHY QNNQVMAQTG VRSFNEDSDR THKRLRTELS * |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00534 | DAP | Transfer from AT5G38860 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006430966.1 | 0.0 | transcription factor BIM3 | ||||
Refseq | XP_024038515.1 | 0.0 | transcription factor BIM3 | ||||
TrEMBL | A0A067FY89 | 0.0 | A0A067FY89_CITSI; Uncharacterized protein | ||||
STRING | XP_006430966.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17167 | 7 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G38860.1 | 1e-65 | BES1-interacting Myc-like protein 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g019485m |