PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g019057m
Common NameCISIN_1g019057mg, LOC102615844
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 347aa    MW: 37886.3 Da    PI: 5.5703
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g019057mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.49.4e-2947141186
           trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                        rWt+qe+l+Li+++r  e+r+rrg+         +++p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e+  +++++s +++ +
  orange1.1g019057m  47 RWTRQEILVLIQGKRVAENRVRRGRaagmgfgsgQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESHVKDGTESFWVMRN 138
                        8**********************97778888888*********************************************9999999999999 PP

           trihelix  84 qle 86 
                        +l+
  orange1.1g019057m 139 DLR 141
                        986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.447113IPR017877Myb-like domain
PfamPF138371.2E-1147136No hitNo description
Gene3DG3DSA:1.10.10.607.7E-547112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MALEQLSLAR TPVDGETDGV NNGVEQRTTT ASIDGGDDGC KAPRLPRWTR QEILVLIQGK  60
RVAENRVRRG RAAGMGFGSG QIEPKWASVS SYCKRHGVNR GPVQCRKRWS NLAGDFKKIK  120
EWESHVKDGT ESFWVMRNDL RRERKLPGFF DREVYDILDG AATVASSASP GLGLALAPAE  180
ETTTDEAVFD SGRSAAADDG LFSDFEPEET TGTPVKDDAP AEAAPAAAKP ISATMPIPEK  240
QYQPNLRGCH GQGTTTEKQP APEIGSTSQD GRKRKRFTVD GDEEMSNMQY QLIDVLERNG  300
KMLTAQLEAQ NNSFQLDREQ RKDHADSLVA VLNKLADALG RIADKL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006420771.10.0trihelix transcription factor ASR3 isoform X1
RefseqXP_024957969.10.0trihelix transcription factor ASR3
SwissprotQ8VZ201e-126ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A067F3Y60.0A0A067F3Y6_CITSI; Uncharacterized protein
TrEMBLA0A2H5PXD20.0A0A2H5PXD2_CITUN; Uncharacterized protein
TrEMBLV4SAN30.0V4SAN3_9ROSI; Uncharacterized protein
STRINGXP_006487537.10.0(Citrus sinensis)
STRINGXP_006420771.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65572843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-124Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]