PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g018897m | ||||||||
Common Name | CISIN_1g018897mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 350aa MW: 39487.4 Da PI: 4.4379 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.2 | 1e-11 | 184 | 227 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L orange1.1g018897m 184 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILADTIDYMKEL 227 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.415 | 178 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-15 | 182 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.7E-12 | 184 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-9 | 184 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.8E-16 | 185 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.41E-5 | 185 | 232 | No hit | No description |
CDD | cd04873 | 0.00142 | 275 | 316 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MEFSEHGFLE ELLALRRDAY TWDTSIPAEM NQIFSDGNWI YDCFDENPAA FSPNSFSAPI 60 HQQDHFNYNN FFNEAAYCPY GDDQLSAPQL TDSSSMNTLD SHTHTPPSFP IQEEAPLSMM 120 ELDGEEPNNL LADEFQNLEM LQNCFKVEPV HESPETLPVF NMGTDCLERK SRNKKLGGQP 180 SKNLMAERRR RKRLNDRLSM LRSIVPKISK MDRTSILADT IDYMKELLDK ISSLQQEIQA 240 GSNNLETGIF KDVKPNEIVV RNSPKFDVER TNMDTRVEIC CAGKPGLLLS TVTSLEALGL 300 EIQQCVISCF NDFAMQASCS EGVEQRETLS CEDIKQALFR NAGYGGKCL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 186 | 193 | ERRRRKRL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006433742.1 | 0.0 | transcription factor bHLH61 | ||||
Swissprot | Q9LSL1 | 2e-81 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A067GRJ6 | 0.0 | A0A067GRJ6_CITSI; Uncharacterized protein | ||||
TrEMBL | V4T1H3 | 0.0 | V4T1H3_9ROSI; Uncharacterized protein | ||||
STRING | XP_006433742.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2043 | 28 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 1e-83 | beta HLH protein 93 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g018897m |
Publications ? help Back to Top | |||
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