PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g018897m
Common NameCISIN_1g018897mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 350aa    MW: 39487.4 Da    PI: 4.4379
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g018897mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21e-11184227654
                        HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  orange1.1g018897m 184 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILADTIDYMKEL 227
                        589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.415178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-15182241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-12184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-9184227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-16185241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.41E-5185232No hitNo description
CDDcd048730.00142275316No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEFSEHGFLE ELLALRRDAY TWDTSIPAEM NQIFSDGNWI YDCFDENPAA FSPNSFSAPI  60
HQQDHFNYNN FFNEAAYCPY GDDQLSAPQL TDSSSMNTLD SHTHTPPSFP IQEEAPLSMM  120
ELDGEEPNNL LADEFQNLEM LQNCFKVEPV HESPETLPVF NMGTDCLERK SRNKKLGGQP  180
SKNLMAERRR RKRLNDRLSM LRSIVPKISK MDRTSILADT IDYMKELLDK ISSLQQEIQA  240
GSNNLETGIF KDVKPNEIVV RNSPKFDVER TNMDTRVEIC CAGKPGLLLS TVTSLEALGL  300
EIQQCVISCF NDFAMQASCS EGVEQRETLS CEDIKQALFR NAGYGGKCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186193ERRRRKRL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006433742.10.0transcription factor bHLH61
SwissprotQ9LSL12e-81BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A067GRJ60.0A0A067GRJ6_CITSI; Uncharacterized protein
TrEMBLV4T1H30.0V4T1H3_9ROSI; Uncharacterized protein
STRINGXP_006433742.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-83beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]