PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g018886m | ||||||||
Common Name | CISIN_1g018886mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 350aa MW: 40437.4 Da PI: 9.2168 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.5 | 6.8e-15 | 20 | 99 | 10 | 93 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 + + + + +p +f+ ++g + s tl++++g +++v + ++k+g +++ +GW+eFv+++ +++g fv+F++ ++s+f+ + orange1.1g018886m 20 TIEDKKMKIPQNFVGRFGDE--LSNVATLTNPEGYVMRVGI--TRKDGNIWFDGGWNEFVEDHSIDVGYFVLFQYRKNSKFRVF 99 4566779*******999855..8889***************..********************************999999544 PP | |||||||
2 | B3 | 47.1 | 4.2e-15 | 260 | 347 | 4 | 97 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 v++++++++++ +++p +fa+++ + +e+ +t++d++gr+ vk+ ++++++y+lt W +F k ++kegD++ F++++ ++ l+v+ orange1.1g018886m 260 VFLRASNMQLNYVYVPTSFARKYLNGEEC---VTVQDSDGRKLAVKV--KQSRRKYLLT-RWGKFFKKTNVKEGDILFFEMIQMKKILLKVS 345 566788999999***********544556...***************..9999999999.9*******************998776667777 PP EE CS B3 96 vf 97 vf orange1.1g018886m 346 VF 347 66 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-21 | 4 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.65E-21 | 5 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.75E-12 | 10 | 102 | No hit | No description |
PROSITE profile | PS50863 | 12.238 | 11 | 104 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-8 | 12 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.7E-12 | 20 | 100 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-16 | 251 | 348 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.88E-16 | 253 | 346 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.06E-12 | 256 | 347 | No hit | No description |
PROSITE profile | PS50863 | 9.939 | 257 | 349 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0014 | 258 | 345 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.2E-14 | 260 | 347 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 350 aa Download sequence Send to blast |
MPSSMKKTYP HFIDVILDST IEDKKMKIPQ NFVGRFGDEL SNVATLTNPE GYVMRVGITR 60 KDGNIWFDGG WNEFVEDHSI DVGYFVLFQY RKNSKFRVFI YNTTTCEIQY PSRNTFPPPR 120 QNQATFDGSK SKNGCEMRGK TYRMEEVKVK EESDNVNDSM QDVIGTCNSE GSVHAKIHLS 180 ETQCSSVQET DLKIDSTKFK KAKHNLKDEL RADSVDRVKL FALLEDMDIH ICESRMTLEE 240 RQEAINVARL LKPEKPSFLV FLRASNMQLN YVYVPTSFAR KYLNGEECVT VQDSDGRKLA 300 VKVKQSRRKY LLTRWGKFFK KTNVKEGDIL FFEMIQMKKI LLKVSVFHA* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Csi.3698 | 1e-173 | callus |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006423123.1 | 0.0 | B3 domain-containing transcription factor VRN1 isoform X2 | ||||
Refseq | XP_006479377.1 | 0.0 | B3 domain-containing transcription factor VRN1 | ||||
Refseq | XP_006479379.1 | 0.0 | B3 domain-containing transcription factor VRN1 | ||||
Refseq | XP_015386267.1 | 0.0 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A067EML3 | 0.0 | A0A067EML3_CITSI; Uncharacterized protein | ||||
STRING | XP_006479377.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006423121.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18536 | 3 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18990.1 | 6e-44 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g018886m |