PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g018835m
Common NameCISIN_1g018835mg, LOC102616041
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 351aa    MW: 39627.9 Da    PI: 5.8459
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g018835mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.81e-5361341128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lppGfrFhPtdeelv +yLk+kv+g ++el evi+ v++yk++Pw+Lp k  + +++ ew+fF++rd+ky++g+r+nratk+gyWkatgkd+
  orange1.1g018835m   6 LPPGFRFHPTDEELVGYYLKRKVDGLQIEL-EVIPVVELYKFDPWELPeKsFLPKRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDR 96 
                        79****************************.99**************95344555788********************************** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +v++++++++g +ktLvfy+grap g +tdWvmheyrl
  orange1.1g018835m  97 KVVCQSTSATGYRKTLVFYRGRAPLGDRTDWVMHEYRL 134
                        ************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-594157IPR003441NAC domain
PROSITE profilePS5100557.2266157IPR003441NAC domain
PfamPF023651.7E-297134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGGASLPPGF RFHPTDEELV GYYLKRKVDG LQIELEVIPV VELYKFDPWE LPEKSFLPKR  60
DMEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDRKVVC QSTSATGYRK TLVFYRGRAP  120
LGDRTDWVMH EYRLCDDVSH GSPNFWGAFA LCRVVKKNEN AQKTSPPSYG EPKGKRVGSS  180
SSIVDLTSSK ACNGPLSISS DISSQASYLY NESRYSSPIT SPYPYEVSTV PESEHAPMET  240
NPANLWVSPD LILDSSKDYP QTHEAVSEYN PNYEFQNSVT PCHPFEHKDF SPGSSYSNFN  300
GEIELAEDLS RFGCMSPYSI HANYTGFYGN EDMPYQGYDH SNSPDYSSLF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-52516316171NO APICAL MERISTEM PROTEIN
1ut4_B2e-52516316171NO APICAL MERISTEM PROTEIN
1ut7_A2e-52516316171NO APICAL MERISTEM PROTEIN
1ut7_B2e-52516316171NO APICAL MERISTEM PROTEIN
3swm_A3e-52516319174NAC domain-containing protein 19
3swm_B3e-52516319174NAC domain-containing protein 19
3swm_C3e-52516319174NAC domain-containing protein 19
3swm_D3e-52516319174NAC domain-containing protein 19
3swp_A3e-52516319174NAC domain-containing protein 19
3swp_B3e-52516319174NAC domain-containing protein 19
3swp_C3e-52516319174NAC domain-containing protein 19
3swp_D3e-52516319174NAC domain-containing protein 19
4dul_A2e-52516316171NAC domain-containing protein 19
4dul_B2e-52516316171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436748.10.0NAC domain-containing protein 71
RefseqXP_024957430.10.0NAC domain-containing protein 71
SwissprotO496971e-105NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A067E7U90.0A0A067E7U9_CITSI; Uncharacterized protein
TrEMBLA0A2H5QWJ30.0A0A2H5QWJ3_CITUN; Uncharacterized protein
TrEMBLV4SQA50.0V4SQA5_9ROSI; Uncharacterized protein
STRINGXP_006485436.10.0(Citrus sinensis)
STRINGXP_006436748.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21512777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-108NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]