PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g018825m

Common Name

CISIN_1g018825mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

M-type_MADS

Protein Properties

Length: 351aa MW: 39459.6 Da PI: 7.2367

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g018825m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	65	7.9e-21	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+ rq t++kR++gi+KKA+ELS+LCd+++ +++fs+tgk orange1.1g018825m 10 KLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGK 53 6799**************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	23.563	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.3E-28	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-24	2	95	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.92E-24	2	82	No hit	No description
PRINTS	PR00404	2.9E-16	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.1E-18	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.9E-16	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.9E-16	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MGRVKLKIKK LENTNGRQAT YAKRKHGIMK KANELSILCD IDIILLMFSP TGKPSLCNGK 60 RSSIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNVQEFLGTS SQTIEDLTNQ 120 ARLLQSQLSE MHRRLRYWTN PDKINSVEHL GQMENSLRDS LNHLRMHKEN LGKQELMSLE 180 CTTQFQNGIC IPFRMGSEEQ LQTLSWIPNN DNRHMVLPED PNLLSHRDVE CSGSSSFGSY 240 SGYFGPGKSS EISNSGQDSS LLSELSGTQS LRLQLGGQCS YIPYNVSLLN DKFQPVSEMN 300 IQENPVDYHV SGSLEVPRPG FDTTPGSWAS TSGPCEVTLF DERLYSQQLN *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MGRVKLKIKK LENTNGRQAT YAKRKHGIMK KANELSILCD IDIILLMFSP TGKPSLCNGK  60
RSSIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNVQEFLGTS SQTIEDLTNQ  120
ARLLQSQLSE MHRRLRYWTN PDKINSVEHL GQMENSLRDS LNHLRMHKEN LGKQELMSLE  180
CTTQFQNGIC IPFRMGSEEQ LQTLSWIPNN DNRHMVLPED PNLLSHRDVE CSGSSSFGSY  240
SGYFGPGKSS EISNSGQDSS LLSELSGTQS LRLQLGGQCS YIPYNVSLLN DKFQPVSEMN  300
IQENPVDYHV SGSLEVPRPG FDTTPGSWAS TSGPCEVTLF DERLYSQQLN *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	1e-12	1	92	1	90	MEF2 CHIMERA
6byy_B	1e-12	1	92	1	90	MEF2 CHIMERA
6byy_C	1e-12	1	92	1	90	MEF2 CHIMERA
6byy_D	1e-12	1	92	1	90	MEF2 CHIMERA
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006438714.1	0.0	agamous-like MADS-box protein AGL30 isoform X2
Refseq	XP_024041454.1	0.0	agamous-like MADS-box protein AGL30 isoform X1
Swissprot	Q1PFA4	1e-121	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A067GTB4	0.0	A0A067GTB4_CITSI; Uncharacterized protein
TrEMBL	V4VH98	0.0	V4VH98_9ROSI; Uncharacterized protein
STRING	XP_006483134.1	0.0	(Citrus sinensis)
STRING	XP_006438714.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	1e-96	AGAMOUS-like 30

Link Out ? help Back to Top
Phytozome	orange1.1g018825m

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]