PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g018780m | ||||||||
Common Name | CISIN_1g018825mg, LOC102611222 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 351aa MW: 39503.7 Da PI: 7.2367 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65 | 7.9e-21 | 11 | 54 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+ rq t++kR++gi+KKA+ELS+LCd+++ +++fs+tgk orange1.1g018780m 11 KLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGK 54 6799**************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.3E-28 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.563 | 2 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.93E-25 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.95E-25 | 3 | 82 | No hit | No description |
PRINTS | PR00404 | 2.9E-16 | 4 | 24 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-18 | 12 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-16 | 24 | 39 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-16 | 39 | 60 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MMGRVKLKIK KLENTNGRQA TYAKRKHGIM KKANELSILC DIDIILLMFS PTGKPSLCNG 60 KRSIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNVQEFLGTS SQTIEDLTNQ 120 ARLLQSQLSE MHRRLRYWTN PDKINSVEHL GQMENSLRDS LNHLRMHKEN LGKQELMSLE 180 CTTQFQNGIC IPFRMGSEEQ LQTLSWIPNN DNRHMVLPED PNLLSHRDVE CSGSSSFGSY 240 SGYFGPGKSS EISNSGQDSS LLSELSGTQS LRLQLGGQCS YIPYNVSLLN DKFQPVSEMN 300 IQENPVDYHV SGSLEVPRPG FDTTPGSWAS TSGPCEVTLF DERLYSQQLN * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024041455.1 | 0.0 | agamous-like MADS-box protein AGL30 isoform X3 | ||||
Swissprot | Q1PFA4 | 1e-119 | AGL30_ARATH; Agamous-like MADS-box protein AGL30 | ||||
TrEMBL | A0A067H5G9 | 0.0 | A0A067H5G9_CITSI; Uncharacterized protein | ||||
STRING | XP_006483134.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8754 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.2 | 2e-94 | AGAMOUS-like 30 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g018780m |
Entrez Gene | 102611222 |
Publications ? help Back to Top | |||
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