PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g018677m
Common NameCISIN_1g018605mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 353aa    MW: 37203.7 Da    PI: 4.9364
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g018677mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_175.85.8e-24256318163
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ +v++L++eN+ L++el++l++e++kl+se+
  orange1.1g018677m 256 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRNLRDELQRLSEECEKLTSEN 318
                        89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.5E-33194IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.0E-7117223No hitNo description
Gene3DG3DSA:1.20.5.1702.0E-20251315No hitNo description
SMARTSM003382.2E-22256320IPR004827Basic-leucine zipper domain
PfamPF001706.1E-21256318IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.587258321IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.85E-12259315No hitNo description
CDDcd147021.58E-24261311No hitNo description
PROSITE patternPS000360263278IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGTGEENTSA KTAKTASSTQ EIPTTPSYAD WSSSMQAFYG AGATPPPFFA STVASPTPHP  60
YLWGSQHPLM PPYGTPVPYQ AIYPPGGVYA HPSMATTPTA APTNTEPEGK GPEAKDRASA  120
KKSKGTPGGK AGEIVKATSG SGNDGVSQSA ESGSDGSSDA SDENGNQQEF ARGKKGSFDK  180
MLADANTENN TAEAVPGSVP GKPVVSMPAT NLNIGMDLWN TSPAAAGAAK MRTNPSGASP  240
AVAPAGIMPD QWIQDERELK RQKRKQSNRE SARRSRLRKQ AECEELQARV ETLSNENRNL  300
RDELQRLSEE CEKLTSENNS IKEDLSRLCG PEAVANLEQS NPTQSCGEEE NS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272278RRSRLRK
2272279RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.26660.0flower| vegetative meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Found in both light and dark grown leaves.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425722.10.0G-box-binding factor 1 isoform X1
RefseqXP_006425724.10.0G-box-binding factor 1 isoform X1
RefseqXP_006425726.10.0G-box-binding factor 1 isoform X1
RefseqXP_006466752.10.0G-box-binding factor 1 isoform X1
RefseqXP_006466753.10.0G-box-binding factor 1 isoform X1
RefseqXP_006466754.10.0G-box-binding factor 1 isoform X1
SwissprotP427741e-126GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A067GVK10.0A0A067GVK1_CITSI; Uncharacterized protein
STRINGXP_006466752.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.19e-98G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]