PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g018654m
Common NameCISIN_1g018659mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 353aa    MW: 39494.7 Da    PI: 10.2381
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g018654mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY993e-31286343359
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+
  orange1.1g018654m 286 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPTMLIVTYEGEHNHP 343
                        99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105337.8E-18237282IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.5E-33272344IPR003657WRKY domain
PROSITE profilePS5081129.953279345IPR003657WRKY domain
SuperFamilySSF1182905.1E-27282344IPR003657WRKY domain
SMARTSM007746.6E-38284344IPR003657WRKY domain
PfamPF031065.5E-27286343IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEEVEEANKA AVESCHRVLS LLSQPQDQVQ YKNLMVETGE AVFRFKKVVS LLNNGSGHAR  60
VRKLRKLPNP VNQSIFLENP HHKTEIPSKN LQFLQSSFHD NPVQEMGSLA KSSLTLGNPS  120
LELISNGKQH LQLGQQTPST SAHYHFLQQQ QLQQRLLHQQ QQQQQHHMKL QAEKMFRKSN  180
SGVSLNFDSS SCTPTMSSNR SFISSLSMDG SVANLDGSAF HLIGAPRSSD QSSQQHKRKC  240
SGRGEDGSVK CGSNGRCHCS KKRKHRVKKS IKVPAISNKL ADIPPDDYSW RKYGQKPIKG  300
SPHPRGYYKC SSMRGCPARK HVERCLEEPT MLIVTYEGEH NHPRLPSQSA TT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-20277346775WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.103260.0callus
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006479579.10.0probable WRKY transcription factor 21
RefseqXP_024045169.10.0probable WRKY transcription factor 21
RefseqXP_024045170.10.0probable WRKY transcription factor 21
RefseqXP_024954695.10.0probable WRKY transcription factor 21
SwissprotO043361e-130WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A067FM750.0A0A067FM75_CITSI; Uncharacterized protein
STRINGXP_006479579.10.0(Citrus sinensis)
STRINGXP_006443899.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.12e-84WRKY DNA-binding protein 21