PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g018626m
Common NameCISIN_1g017348mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 354aa    MW: 38594.4 Da    PI: 4.333
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g018626mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA498.5e-16225261135
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ k++
  orange1.1g018626m 225 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKET 261
                        *******99************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.3E-785120IPR010399Tify domain
PROSITE profilePS5132013.11785120IPR010399Tify domain
PfamPF062003.5E-1088119IPR010399Tify domain
PROSITE profilePS5101712.719153195IPR010402CCT domain
PfamPF062037.0E-15153194IPR010402CCT domain
SMARTSM004015.3E-10219272IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-10220263No hitNo description
Gene3DG3DSA:3.30.50.101.7E-13223262IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.20E-12224259No hitNo description
PfamPF003201.5E-13225261IPR000679Zinc finger, GATA-type
PROSITE patternPS003440225252IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MAAANPQPLQ ARPFEEHARA PPIQIEDEDG DYEDGEGMDD IDEGNINSIN IINNNNNNNN  60
TNNNSNISNN SSMVNVAEHG VVVAAASRTS ELTLSFEGEV YVFPAVTPEK VQAVLLLLGG  120
RDIPTGVPTI EVPYDQSNRG VVDTPKRSNL SRRIASLVRF REKRKERCFD KKIRYSVRKE  180
VAQRMHRKNG QFASLKESSG ASPWDSSQDG IQDGTPRPET VVRRCQHCGV SENNTPAMRR  240
GPAGPRTLCN ACGLMWANKE TPMDVKPSIM EGEFSGNQDE LGTPEDPAKA VNQGSDNPSI  300
DPDEEDMHGA AEDLTNSLPM GLVHSSADDD EQEPLVELAN PSDTDIDIPS NFD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142147DTPKRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.10881e-156fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024039694.10.0GATA transcription factor 24 isoform X2
SwissprotQ8GXL74e-65GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A067GRD70.0A0A067GRD7_CITSI; Uncharacterized protein
STRINGXP_006433794.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-68ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]