PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g018583m
Common NameCISIN_1g018583mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 354aa    MW: 40716.4 Da    PI: 7.2704
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g018583mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.33e-32183237155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k+r+rWt++LHe+Fve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  orange1.1g018583m 183 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRM 237
                        68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.94E-17181237IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-28182238IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-23183238IPR006447Myb domain, plants
PfamPF002491.2E-8187236IPR001005SANT/Myb domain
PfamPF143793.2E-20268314IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MNTQKLNFQE TFQKKHLDFG PPSQYFGDIH HQQPWMMRTT TQQHQNLDHA RSPSTILSRF  60
ESPASAFYAT ERYMGFCQYD SQAAGNNCSQ FSRTCDSSQQ FHLYQSPGEN FSVLSAEQAV  120
PLEIPWNFYK SPEASCINPL GKQYSGPFDE HQDHRGYASH QEKQSPRFSS SSSFSTGPVI  180
TNKTRIRWTQ DLHEKFVECV NRLGGADKAT PKAILKLMDS EGLTIFHVKS HLQKYRMAKY  240
VPEFPEGKLE KRSSLNDLPQ IDVKATLQIK EALQLQLDVQ RRLHEQLEIQ RKLQLRIEEQ  300
GKHLQMLFDQ QQKASKDHSK PQNLEKVPED DPPFNFEGIE FSTSENSGNS HFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-22183240259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-22183240259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-22183240259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-22183240259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-22183240259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-22183240259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-22183240259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-22183240259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015380887.10.0myb family transcription factor PHL5
SwissprotQ0WVU31e-75PHL5_ARATH; Myb family transcription factor PHL5
TrEMBLA0A067EG300.0A0A067EG30_CITSI; Uncharacterized protein
STRINGXP_006429845.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54762748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.12e-73G2-like family protein