PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g018498m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | GRF | ||||||||
Protein Properties | Length: 356aa MW: 39180.7 Da PI: 9.1647 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 71.9 | 7.4e-23 | 74 | 118 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH++r+r rsrk++e+ orange1.1g018498m 74 DPEPGRCRRTDGKKWRCSKDAHPNSKYCERHMNRSRYRSRKPVES 118 79****************************************986 PP | |||||||
2 | QLQ | 59.2 | 1.2e-20 | 13 | 47 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+++L++Q+l++KyL a++PvPp+Ll++i+ orange1.1g018498m 13 PFTASQWHELEHQALIFKYLKAGLPVPPDLLVPIR 47 9********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 7.7E-12 | 12 | 48 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.2E-16 | 13 | 47 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.503 | 13 | 48 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.45 | 74 | 118 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.3E-19 | 75 | 117 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MSGSGSLSSS VAPFTASQWH ELEHQALIFK YLKAGLPVPP DLLVPIRTSL KFLSSSLFHH 60 PTFGYCSYFG KKIDPEPGRC RRTDGKKWRC SKDAHPNSKY CERHMNRSRY RSRKPVESQN 120 TSQSLSTTVG VDIGGNRSSI GSGGGGGSRS LSFQNPPLQP LGTREGLCFR SNMSQSQMAA 180 IPYGIPNKEY RLQELKPEGN DGVLSMASES LRGFTMNSSV DNSWCVTTSG SSSIPLSDQR 240 SGAFLQNSCL PMQTLQDFDS LIGNGATSKQ QQQHYFFGRE FDSSRSQKQE HQALQPLPDE 300 LPKTIDFGYY LDDQRANKSS LSTTQLSMST PIASSKFFET SAHSSKDTSM DKFLS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.528 | 0.0 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006432587.1 | 0.0 | growth-regulating factor 4 isoform X2 | ||||
Refseq | XP_006493632.1 | 0.0 | growth-regulating factor 4-like isoform X2 | ||||
TrEMBL | V4SYE5 | 0.0 | V4SYE5_9ROSI; Uncharacterized protein | ||||
STRING | XP_006493631.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006432586.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 3e-37 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g018498m |