PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g018495m | ||||||||
Common Name | CISIN_1g018495mg, LOC102615136 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | HSF | ||||||||
Protein Properties | Length: 356aa MW: 39636.9 Da PI: 6.376 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 116.4 | 1.8e-36 | 13 | 105 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 F++k+y++++d+++++lisw + +nsf+v+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++ weF++++F +g+k+l orange1.1g018495m 13 FVMKTYQMVNDPTTDSLISWGKANNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEWFLRGQKHL 95 9****************************************************************999.........*************** PP XXXXXXXXXX CS HSF_DNA-bind 94 lekikrkkse 103 l++i r+k++ orange1.1g018495m 96 LKNIVRRKHS 105 ******9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 2.9E-54 | 9 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 5.85E-34 | 10 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.7E-38 | 10 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.2E-30 | 13 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-18 | 13 | 36 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-18 | 51 | 63 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 52 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-18 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MEPNNTNNVI APFVMKTYQM VNDPTTDSLI SWGKANNSFI VVDPLDFSQR ILPAYFKHNN 60 FSSFVRQLNT YGFRKVDPDK WEFANEWFLR GQKHLLKNIV RRKHSSNRSA HHMMMRGGAG 120 DQDLDDEEIV MEIARLRQEQ KSLDEELQGM NKRLEATERR PEQMMAFLYK VVEDPDLLPR 180 IIMEKESTTN RNNYYLGDKK RRLMISSSSQ QQQQPSNSSS SGMAASSSIK SEEEEVGNIG 240 VISSSSPDSG FDNSNNNNSN NFCQSSPSPD SNNNNNNYSV SSSGWLLGQS RQVMNSYGCA 300 AIPSPVSAIP ATARNSTSSG TSTNGQMGYF GEMVTGVESR PPTPPYPFSL LGGGF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 3e-25 | 10 | 102 | 26 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-25 | 10 | 102 | 26 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-25 | 10 | 102 | 26 | 129 | Heat shock factor protein 1 |
5hdg_A | 2e-25 | 10 | 102 | 7 | 110 | Heat shock factor protein 1 |
5hdn_A | 2e-25 | 10 | 102 | 7 | 110 | Heat shock factor protein 1 |
5hdn_B | 2e-25 | 10 | 102 | 7 | 110 | Heat shock factor protein 1 |
5hdn_C | 2e-25 | 10 | 102 | 7 | 110 | Heat shock factor protein 1 |
5hdn_D | 2e-25 | 10 | 102 | 7 | 110 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.1282 | 0.0 | flower| fruit| vegetative meristem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00379 | DAP | Transfer from AT3G24520 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006475618.1 | 0.0 | heat stress transcription factor C-1 | ||||
Swissprot | Q9LV52 | 2e-95 | HSFC1_ARATH; Heat stress transcription factor C-1 | ||||
TrEMBL | A0A067EI45 | 0.0 | A0A067EI45_CITSI; Uncharacterized protein | ||||
STRING | XP_006475618.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6775 | 27 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 1e-94 | heat shock transcription factor C1 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g018495m |
Entrez Gene | 102615136 |
Publications ? help Back to Top | |||
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