PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g018419m | ||||||||
Common Name | CISIN_1g017978mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | G2-like | ||||||||
Protein Properties | Length: 357aa MW: 39650.5 Da PI: 7.9432 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.1 | 4e-33 | 17 | 71 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFv+av++LGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl orange1.1g018419m 17 KPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRL 71 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.076 | 14 | 74 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-31 | 15 | 72 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.02E-16 | 16 | 72 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-23 | 17 | 72 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.5E-9 | 19 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.3E-22 | 116 | 162 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MGLQNQNMNL VLSTDAKPRL KWTPELHQRF VDAVNHLGGP DKATPKSLMR VMGIPGLTLY 60 HLKSHLQKYR LGKSQHVEAC IDNKQVVEYK ETQSSSDGHV NRNISDGTLN QLNDLQIAQA 120 LQVQMEVQRK LHEQIEVQRH LQLRIEAQGK YLQSVLKKAQ ETLAGYSSSS AGVELAKAEL 180 SQLVSMVSMG CPSSSVSELT EAGTSSLKDF ERKQIRSTIC SMESSLTSSE SSGRKEEKQP 240 VNEIGDTDTC KSNKTTPELQ LMDIHIHPQD KPFKARSSNQ ASGRKRREST ISDGFPDEQQ 300 TAKRLATQNE KYDDQLRNTG LVGRFDLNSQ YQNESESGSK AIDLNCKGLD QLNGPL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-20 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-20 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 8e-20 | 17 | 73 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 8e-20 | 17 | 73 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 8e-20 | 17 | 73 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 8e-20 | 17 | 73 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-20 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-20 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-20 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-20 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-20 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-20 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015387123.1 | 0.0 | myb family transcription factor PHL8-like isoform X5 | ||||
Swissprot | F4I274 | 7e-80 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
TrEMBL | A0A067GW74 | 0.0 | A0A067GW74_CITSI; Uncharacterized protein | ||||
STRING | XP_006438708.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69580.2 | 3e-82 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g018419m |
Publications ? help Back to Top | |||
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