PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g018383m
Common NameCISIN_1g017978mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 358aa    MW: 39751.6 Da    PI: 7.9432
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g018383mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.14e-331771155
            G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       kprl+WtpeLH+rFv+av++LGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl
  orange1.1g018383m 17 KPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRL 71
                       79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.0761474IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-311572IPR009057Homeodomain-like
SuperFamilySSF466891.02E-161672IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-231772IPR006447Myb domain, plants
PfamPF002499.5E-91970IPR001005SANT/Myb domain
PfamPF143791.3E-22117163IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGLQNQNMNL VLSTDAKPRL KWTPELHQRF VDAVNHLGGP DKATPKSLMR VMGIPGLTLY  60
HLKSHLQKYR LGKSQHVEAC IDNKQVVEYK ETQSSSDGHV NRNISDGTLN QLNESLQIAQ  120
ALQVQMEVQR KLHEQIEVQR HLQLRIEAQG KYLQSVLKKA QETLAGYSSS SAGVELAKAE  180
LSQLVSMVSM GCPSSSVSEL TEAGTSSLKD FERKQIRSTI CSMESSLTSS ESSGRKEEKQ  240
PVNEIGDTDT CKSNKTTPEL QLMDIHIHPQ DKPFKARSSN QASGRKRRES TISDGFPDEQ  300
QTAKRLATQN EKYDDQLRNT GLVGRFDLNS QYQNESESGS KAIDLNCKGL DQLNGPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-201673158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-201673158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A9e-201773157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-201773157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-201773157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-201773157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-201673158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-201673158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-201673158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-201673158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-201673158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-201673158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438708.10.0myb family transcription factor PHL8 isoform X3
RefseqXP_006483142.10.0myb family transcription factor PHL8-like isoform X4
SwissprotF4I2741e-81PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A067H5V60.0A0A067H5V6_CITSI; Uncharacterized protein
STRINGXP_006438708.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.18e-84G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]