PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g018284m
Common NameCISIN_1g015258mg, LOC102614544
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 359aa    MW: 40025.8 Da    PI: 8.4647
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g018284mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.12.5e-1073113545
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                        k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  orange1.1g018284m  73 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 113
                        788*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.6E-862116No hitNo description
SMARTSM003382.7E-969132IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.41571115IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.94E-773116No hitNo description
PfamPF001701.9E-773113IPR004827Basic-leucine zipper domain
PROSITE patternPS0003607691IPR004827Basic-leucine zipper domain
PfamPF141447.2E-31155230IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MPLQKEPQSN LISVSSGHRE NWGESNMAEA SPITDTSTDD TEDKNQRFER GQLTAVAASD  60
SSDKSKEKSG DQKTLRRLAQ NREAARKSRL RKKAYVQQLE SSRLKLTQLE QELQRARQQG  120
IFISSSGDQS HSMSGNGAAA FDVEYSRWLE EHNRHIVELR AAVNSHAGDT ELRTIVDNVT  180
SHFDEIFRLK GIASKADVFH ILSGMWKTPA ERCFMWIGGF RSSELLKLLV NQLEPLTEQQ  240
LVGIYNLQQS SQQAEDALSQ GMDALQQSLA ETLANGSPSP SGTSGNVANY MGQMAMAMGK  300
LGTLEGFLRQ ADNLRQQTLQ QMHRILTTRQ SARALLAIND YFSRLRALSS LWLARPRE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.29701e-116callus
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421096.10.0transcription factor HBP-1b(c38)
RefseqXP_006421097.10.0transcription factor HBP-1b(c38)
RefseqXP_006477494.10.0transcription factor HBP-1b(c38)
RefseqXP_024954454.10.0transcription factor HBP-1b(c38)
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A067E0Z90.0A0A067E0Z9_CITSI; Uncharacterized protein
TrEMBLV4S6820.0V4S682_9ROSI; Uncharacterized protein
STRINGXP_006477494.10.0(Citrus sinensis)
STRINGXP_006421095.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-138TGACG motif-binding factor 6