PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g018215m | ||||||||
Common Name | CISIN_1g018215mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | WRKY | ||||||||
Protein Properties | Length: 360aa MW: 38791.9 Da PI: 9.6243 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.1 | 5.5e-31 | 287 | 344 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp ++++tYeg+Hnh orange1.1g018215m 287 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPMMLIVTYEGDHNHA 344 99************************988****************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 4.0E-17 | 238 | 283 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 6.8E-33 | 272 | 344 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.549 | 280 | 346 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-26 | 283 | 344 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-37 | 285 | 345 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-26 | 287 | 343 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MAVELMMGYG CGDSFAAAVK MEENAVQEAA SEGMQSIGEF IKLLSRSGQV PSEQQTQYQE 60 STSSSPTNLE PDKEIKVAAE VAVNNFKKVI SLLGRPRTGH ARFRRAPVGS PPPPPPPPPQ 120 KEEKVHLQEP AGPSVQSTNH LSKEQVSAFK VYCPTPVHRL PPLPHQVHKS NPNSTVVTKS 180 DHVPSSINFS ASATNSFISS LTGTAGDTDS IQPSFSSGFQ FTTPSSAGKP PLSSSSLKRK 240 CNSMDDAALK CGSSSGRCHC SKKRKSRIKR VTRVPAISSK MADIPPDDYS WRKYGQKPIK 300 GSPHPRGYYK CSSVRGCPAR KHVERALDDP MMLIVTYEGD HNHAFAVHDA PAAMVLESS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-21 | 272 | 343 | 1 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00450 | DAP | Transfer from AT4G24240 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ377434 | 5e-79 | GQ377434.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006473278.1 | 0.0 | probable WRKY transcription factor 7 | ||||
Swissprot | Q9STX0 | 1e-113 | WRKY7_ARATH; Probable WRKY transcription factor 7 | ||||
TrEMBL | A0A067H8Z4 | 0.0 | A0A067H8Z4_CITSI; Uncharacterized protein | ||||
STRING | XP_006473278.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1715 | 28 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24240.1 | 1e-102 | WRKY DNA-binding protein 7 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g018215m |