PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g018135m

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

M-type_MADS

Protein Properties

Length: 361aa MW: 40632.8 Da PI: 6.5735

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g018135m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	74.9	6.3e-24	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRrngilKKA ELS+LCd+++ +++fs+tg+ orange1.1g018135m 9 KRLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGR 53 689****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.0E-31	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	25.833	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.7E-26	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.1E-20	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.1E-20	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.1E-20	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.1E-20	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MGRVKLKIKR LESTSNRQVT YSKRRNGILK KARELSILCD IDIVLLMFSP TGRSTLFHGQ 60 RSNIEEVIAR FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFLGAS TQTVEELTHQ 120 VRILQAQLTE VHQRLSYWSN PGNIESIEHL RQMENSLRES INQICLHKEN FGKQQLMSLE 180 FAGQSGMHLP LMMNVMQENQ SLSWLPNNDN QHMLVPNDPS FLPQRDMGCS EDAHISSYSG 240 FLGAGKEIEV GNSGQVENME HGGGNLNELS NNACISLQLG EQYSYPPYSS LNLPSDDKKL 300 KPDAEMNLQG NPAVYQVNSN FELSGPMYGN GHHDWVSASG PCGIAMFDEN SYHQQTNRLS 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MGRVKLKIKR LESTSNRQVT YSKRRNGILK KARELSILCD IDIVLLMFSP TGRSTLFHGQ  60
RSNIEEVIAR FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFLGAS TQTVEELTHQ  120
VRILQAQLTE VHQRLSYWSN PGNIESIEHL RQMENSLRES INQICLHKEN FGKQQLMSLE  180
FAGQSGMHLP LMMNVMQENQ SLSWLPNNDN QHMLVPNDPS FLPQRDMGCS EDAHISSYSG  240
FLGAGKEIEV GNSGQVENME HGGGNLNELS NNACISLQLG EQYSYPPYSS LNLPSDDKKL  300
KPDAEMNLQG NPAVYQVNSN FELSGPMYGN GHHDWVSASG PCGIAMFDEN SYHQQTNRLS  360
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	4e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_Q	4e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_R	4e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_S	4e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_A	4e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_B	4e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_C	4e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_D	4e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_E	4e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_F	4e-15	1	92	1	90	Myocyte-specific enhancer factor 2B
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.1278	0.0	fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006440615.1	0.0	agamous-like MADS-box protein AGL65
Refseq	XP_024044106.1	0.0	agamous-like MADS-box protein AGL65
Refseq	XP_024044107.1	0.0	agamous-like MADS-box protein AGL65
Refseq	XP_024044108.1	0.0	agamous-like MADS-box protein AGL65
Swissprot	Q7X9I0	1e-114	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	V4TQ76	0.0	V4TQ76_9ROSI; Uncharacterized protein
STRING	XP_006477467.1	0.0	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-110	AGAMOUS-like 65

Link Out ? help Back to Top
Phytozome	orange1.1g018135m

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]