PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g018007m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 363aa MW: 39890.2 Da PI: 9.2961 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.7 | 8.8e-13 | 290 | 335 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +Av+YIk+Lq orange1.1g018007m 290 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 335 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.25 | 284 | 334 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.97E-16 | 287 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.43E-13 | 288 | 337 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.6E-14 | 289 | 346 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.0E-12 | 290 | 340 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.7E-10 | 290 | 335 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 363 aa Download sequence Send to blast |
MDSSTNHNYH QQSNPGLSRF NSAPTALLVN FTDSLESGGV NKSSFESERL ISRFMNSGGD 60 NSNNSSFQEF EVKSPVSYGN SQQSCSGLPP HYPRQSSAMD HNSYDLFLDQ SSRVKSVNSN 120 LVRQSSSPAG LFAKLSAQNG YASTKEVGSY GGVNGSNGDL SPSTKRLKSQ ISIPSRIPSS 180 LGMLSRVSEV ESDGPTHGKV RNGNGDTQFY STGFSYGSWN DSSHFTESFT DMKREQGNGE 240 LGNSVHMLSH HLSLPKTSAE MAAVEKFLQF QDSVPCKIRA KRGCATHPRS IAERVRRTRI 300 SERMRKLQEL VPNMDKQTNT ADMLDLAVDY IKDLQNQFKT LSDNRAKCKC SKIQKPVENQ 360 IV* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00308 | DAP | Transfer from AT2G42280 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006421491.1 | 0.0 | transcription factor bHLH130 | ||||
Swissprot | Q66GR3 | 1e-102 | BH130_ARATH; Transcription factor bHLH130 | ||||
TrEMBL | A0A2H5PTI4 | 0.0 | A0A2H5PTI4_CITUN; Uncharacterized protein | ||||
TrEMBL | V4SCQ7 | 0.0 | V4SCQ7_9ROSI; Uncharacterized protein | ||||
STRING | XP_006421491.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6293 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42280.1 | 1e-100 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g018007m |
Publications ? help Back to Top | |||
---|---|---|---|
|