PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g017978m | ||||||||
Common Name | CISIN_1g017978mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | G2-like | ||||||||
Protein Properties | Length: 364aa MW: 40509.3 Da PI: 7.6172 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.1 | 4.1e-33 | 17 | 71 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFv+av++LGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl orange1.1g017978m 17 KPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRL 71 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.076 | 14 | 74 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-31 | 15 | 72 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.04E-16 | 16 | 72 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-23 | 17 | 72 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.8E-9 | 19 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.4E-19 | 117 | 169 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MGLQNQNMNL VLSTDAKPRL KWTPELHQRF VDAVNHLGGP DKATPKSLMR VMGIPGLTLY 60 HLKSHLQKYR LGKSQHVEAC IDNKQVVEYK ETQSSSDGHV NRNISDGTLN QLNESLQIAQ 120 ALQVQMEVQR KLHEQIEYES YSQVQRHLQL RIEAQGKYLQ SVLKKAQETL AGYSSSSAGV 180 ELAKAELSQL VSMVSMGCPS SSVSELTEAG TSSLKDFERK QIRSTICSME SSLTSSESSG 240 RKEEKQPVNE IGDTDTCKSN KTTPELQLMD IHIHPQDKPF KARSSNQASG RKRRESTISD 300 GFPDEQQTAK RLATQNEKYD DQLRNTGLVG RFDLNSQYQN ESESGSKAID LNCKGLDQLN 360 GPL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-19 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-19 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-19 | 17 | 73 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-19 | 17 | 73 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-19 | 17 | 73 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-19 | 17 | 73 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-19 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-19 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-19 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-19 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-19 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-19 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006483139.1 | 0.0 | myb family transcription factor PHL8-like isoform X1 | ||||
Refseq | XP_024041825.1 | 0.0 | myb family transcription factor PHL8 isoform X1 | ||||
Swissprot | F4I274 | 5e-79 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
TrEMBL | A0A067H5F8 | 0.0 | A0A067H5F8_CITSI; Uncharacterized protein | ||||
STRING | XP_006483139.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3878 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69580.1 | 2e-81 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g017978m |
Publications ? help Back to Top | |||
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