PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g017958m
Common NameCISIN_1g009155mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 364aa    MW: 40678.2 Da    PI: 6.8326
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g017958mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.62.6e-16741135
               GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                       C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  orange1.1g017958m  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                       ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.6E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-11545No hitNo description
CDDcd002025.79E-17654No hitNo description
PfamPF003204.2E-14741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF139191.1E-6282335IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDYEDH  60
RVSKVKSISI NKNKDVKVLK RKSNYDNVVV GGFAPDYNHG YRKVVDEDTS NRSSSGSAIS  120
NSESCVQFGS ADASDLTGPA QSNVWDSVVP SKKRTCVNRP KQSPVEKLTK DLYTILHEQQ  180
SSYFSGSSEE DLLFESETPM VSVEIGHGSV LIRHPSSIAR EEESEASSLS VENKQYLVNE  240
SYSRSATLHV YNDYQGVNFS SRNMDKAKNF IEQGMQQDQL KRDKSQQEKL QILGSHTSPL  300
CEIDLNDILN FKEFVGHLTH EEQQQLLKYL PLNDTTVFPD SNCLQKGFLI SHSWGWQPKT  360
AGH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.111340.0flower
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440183.10.0GATA transcription factor 26
SwissprotQ8W4H11e-122GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A067F0N40.0A0A067F0N4_CITSI; Uncharacterized protein
STRINGXP_006440183.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-114GATA transcription factor 26