PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g017908m
Common NameCISIN_1g011077mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HSF
Protein Properties Length: 365aa    MW: 40743.2 Da    PI: 4.8522
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g017908mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.43.6e-36151072103
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y+++ed+++++++sws+++nsf+v++  ef++++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++          eF+++ F +g+k+l
  orange1.1g017908m  15 FLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------YEFANEGFLRGQKHL 97 
                        9*****************************************************************99.........78************* PP

                        XXXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkkse 103
                        l++i r+k +
  orange1.1g017908m  98 LKSISRRKPA 107
                        ******9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-38699IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.54E-3410104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-5811104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-201538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.9E-3115104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-205365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MSSSSAANGN SLPPFLSKIY DMVEDPSTND IVSWSSSNNS FIVWKVAEFS RDLLPKYFKH  60
SNFSSFVRQL NTYGFRKVDP DRYEFANEGF LRGQKHLLKS ISRRKPAQVH GQQQPKLQNS  120
SVGACVEVGK YGLEEEVEIL KRDKNVLMQE LVRLRQQQQA TDRQLHTVGQ RVQVMEQRQQ  180
QMINLSTFLI DNIPSANALE NGHSSSQISG VTLSEVPPNS GQSNMSTESR FHVPSSAISE  240
IQCSPCVSDS VKVNPTQEKK NLDPTALDGT MSIDADAFSP DHDVDVSPDG IHKLPRIDDA  300
FWEEFLTASP LPGDTDEINS SPLESGMTSE LEQQPEQANG WDNFQHMDHL TEQMGLLTSE  360
SRRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-27510419129Heat shock factor protein 1
5d5v_B3e-27510419129Heat shock factor protein 1
5d5v_D3e-27510419129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.171710.0flower| seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888350.11e-131heat stress transcription factor A-1e-like isoform X2
SwissprotQ9SCW51e-90HFA1E_ARATH; Heat stress transcription factor A-1e
TrEMBLA0A2H5PW810.0A0A2H5PW81_CITUN; Uncharacterized protein
STRINGXP_006478966.11e-122(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.14e-85heat shock transcription factor A1D
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]