PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g017895m | ||||||||
Common Name | CISIN_1g017895mg, LOC102613522 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | WRKY | ||||||||
Protein Properties | Length: 365aa MW: 41108.7 Da PI: 5.053 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.4 | 3.5e-29 | 127 | 188 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK++ g +fpr+YYrCt++ gC ++k+v+rs++dp+++e+tY+g+H+++ orange1.1g017895m 127 LDDGYCWRKYGQKDILGRNFPRGYYRCTHRharGCLATKQVQRSDDDPSMFEVTYRGRHKCS 188 59***************************99999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.3E-28 | 117 | 189 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.629 | 122 | 185 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-25 | 126 | 189 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.7E-40 | 127 | 189 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-26 | 128 | 187 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MKRSTMDRDQ NILITELAQG KELAKRLRNH LNPSSSPETR EFLVQEILSS YEKALSMLNY 60 SHSLQSNKLD ITMVESPRSF PNTATSPRSD ASDQDYCKDV VSKKRKTMPQ WTEQVKVTSG 120 TALEGTLDDG YCWRKYGQKD ILGRNFPRGY YRCTHRHARG CLATKQVQRS DDDPSMFEVT 180 YRGRHKCSQN SHLALASTSS TKQVSIDQKN PCCNQQKESE EKPKEANGVM LNFGAELRVK 240 SEDLDAAESI FSPFSFPHES IGQENINVED NLFLDGMIDN NFMGGFSPTF ISPATSESNY 300 FSMSPCHMTN FGLGYDVQTP ESDLKAEIIS TPTSVINSPF GDFDFSLTKE DLDPNFQFDD 360 LDCF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 4e-19 | 127 | 185 | 14 | 74 | Disease resistance protein RRS1 |
5w3x_D | 4e-19 | 127 | 185 | 14 | 74 | Disease resistance protein RRS1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.7433 | 0.0 | flower| fruit| leaf |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00112 | ampDAP | Transfer from AT2G46400 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006491244.1 | 0.0 | probable WRKY transcription factor 46 | ||||
TrEMBL | A0A067HEM2 | 0.0 | A0A067HEM2_CITSI; Uncharacterized protein | ||||
STRING | XP_006491244.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1933 | 27 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 1e-49 | WRKY DNA-binding protein 46 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g017895m |
Entrez Gene | 102613522 |