PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g017854m
Common NameCISIN_1g017854mg, LOC102614981
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 366aa    MW: 40389.3 Da    PI: 8.7381
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g017854mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.99.8e-54151421128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeelvv+yLkkk+++ +l++  +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++
  orange1.1g017854m  15 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-AIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPI 105
                        79****************************.88***************8888999************************************* PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        l++ ++++vg+kk Lvfy g+ pkg kt+W+mheyr+
  orange1.1g017854m 106 LTSkGNQKVGVKKALVFYGGKPPKGIKTNWIMHEYRI 142
                        99867788***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-646180IPR003441NAC domain
PROSITE profilePS5100561.40315180IPR003441NAC domain
PfamPF023653.7E-2816142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MESTDSSTSS QHPQLPPGFR FHPTDEELVV HYLKKKAASA PLPVAIIAEV DLYKFDPWEL  60
PSKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTSKG NQKVGVKKAL  120
VFYGGKPPKG IKTNWIMHEY RIVDNISGTK PPPHQLPADL ANKKHSLRLD DWVLCRIYKK  180
NNAQRPMERD RDEDSFEGMC VTLPPNQNPK PFPAPPGRST LSYGSIFEQD DHFFEGMLSS  240
AGEGIHQNSC VSSSKPPPNT MSMSLVSPTS NSIKRAIPPQ FWNEASGSMA SSPSRKSFLG  300
DLNSGSGTAT DHEHDHDSNS FVSLLNQLPQ SAQFNPNTSA LLGSLGDATA TLRQQFQLPA  360
MNWNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-731518317168NO APICAL MERISTEM PROTEIN
1ut4_B3e-731518317168NO APICAL MERISTEM PROTEIN
1ut7_A3e-731518317168NO APICAL MERISTEM PROTEIN
1ut7_B3e-731518317168NO APICAL MERISTEM PROTEIN
3swm_A3e-731518320171NAC domain-containing protein 19
3swm_B3e-731518320171NAC domain-containing protein 19
3swm_C3e-731518320171NAC domain-containing protein 19
3swm_D3e-731518320171NAC domain-containing protein 19
3swp_A3e-731518320171NAC domain-containing protein 19
3swp_B3e-731518320171NAC domain-containing protein 19
3swp_C3e-731518320171NAC domain-containing protein 19
3swp_D3e-731518320171NAC domain-containing protein 19
4dul_A3e-731518317168NAC domain-containing protein 19
4dul_B3e-731518317168NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during pollen development and maturation. {ECO:0000269|PubMed:21107887}.
UniprotTISSUE SPECIFICITY: Expressed specifically in the tapetum. {ECO:0000269|PubMed:21107887}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467845.10.0NAC transcription factor 25
SwissprotQ8GY421e-109NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A067GKJ10.0A0A067GKJ1_CITSI; Uncharacterized protein
STRINGXP_006467845.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-112NAC domain containing protein 25