PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g017819m | ||||||||
Common Name | CISIN_1g017819mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | CO-like | ||||||||
Protein Properties | Length: 366aa MW: 39994.4 Da PI: 6.5004 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 16.5 | 1.8e-05 | 18 | 59 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 r+C+++ + +C+ + +lC C + H H++ orange1.1g017819m 18 RVCDTCRAAACTVYCKADMAYLCSACDSRVHVAnrvafrHER 59 79******99******************99944456666765 PP | |||||||
2 | zf-B_box | 32.1 | 2.3e-10 | 61 | 105 | 4 | 42 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C+ +e+ ++ + C+ + lC+ C e+H+ H++vp+ orange1.1g017819m 61 FVCESCEQAPAAFLCKADAASLCAACDAEIHSAnplarrHQRVPI 105 68*****************************66899999**9997 PP | |||||||
3 | CCT | 70.4 | 4.4e-24 | 296 | 339 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++ orange1.1g017819m 296 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 339 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.7E-6 | 15 | 62 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.224 | 15 | 62 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.36E-7 | 18 | 62 | No hit | No description |
PROSITE profile | PS50119 | 11.604 | 58 | 105 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.35E-9 | 61 | 105 | No hit | No description |
Pfam | PF00643 | 3.9E-8 | 61 | 105 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.0E-11 | 63 | 105 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 7.0E-18 | 296 | 338 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.648 | 296 | 338 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048576 | Biological Process | positive regulation of short-day photoperiodism, flowering | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MMKEESNDGS GGGNSWARVC DTCRAAACTV YCKADMAYLC SACDSRVHVA NRVAFRHERV 60 FVCESCEQAP AAFLCKADAA SLCAACDAEI HSANPLARRH QRVPILPISG SVYGGRTGAT 120 PEGHHEDDQD EEEAASWLLL SNPGKNCGNG NNGNNNGFLF GGEVDEYLDL VDYTGGNQYL 180 DQYSNGNNNQ QQHGVAQKGY VGDSVVPVQC ELANKDHHRH QQNFQLGLDY DSSKAGYSYN 240 GSISHSVSVS STDLGVVPES TMSDISISHS RPPKGTIDLF SGPPIQMPPQ LTPMDREARV 300 LRYREKKKTR KFEKTIRYAS RKAYAETRPR IKGRFAKRTD AEVEVDQMFS ATLMTDPGYG 360 IVPSF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.11739 | 0.0 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed throughout development. | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaves. Expressed at lower levels in stems, flowers and siliques. Not detected in roots. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Does not affect flowering time. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ373207 | 1e-168 | FJ373207.1 Poncirus trifoliata CO-like protein mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006430882.1 | 0.0 | zinc finger protein CONSTANS-LIKE 2 | ||||
Swissprot | Q96502 | 1e-151 | COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2 | ||||
TrEMBL | A0A067EUU9 | 0.0 | A0A067EUU9_CITSI; Uncharacterized protein | ||||
STRING | XP_006430882.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2128 | 26 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02380.1 | 1e-105 | CONSTANS-like 2 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g017819m |
Publications ? help Back to Top | |||
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