PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g017725m
Common NameCISIN_1g017725mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TCP
Protein Properties Length: 368aa    MW: 41068.2 Da    PI: 7.2757
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g017725mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP90.24.5e-28522023117
                TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssas 71 
                        g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl   k  i++l+ +                       + +s++
  orange1.1g017725m  52 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLDVTKNDIDKLPPLqipqglfghqfhpsqmmlqsnapT-TSHH 142
                        79*************************************************************888888888666666666554422.2221 PP

                TCP  72 ec.eaesssssasnsssg....................kaaksaa.kskksqksaasalnlakesrak 117
                        +  ++++s+        +                    +a+k ++ ++ +++k +++a++l++++++k
  orange1.1g017725m 143 SLmTNSTSV--------DdhgdqdqsryswdleavslmRANKGKEvERDHEDKIHQEASSLSAHHHQK 202
                        222111111........012222223466777777777444433334444444444445555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.79853111IPR017887Transcription factor TCP subgroup
PfamPF036341.6E-2853173IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MISTSRERGF QAKQEDDTSE SSKLISRPPP SSSRQWSGFR NPRIVRVSRS FGGKDRHSKV  60
CTIRGLRDRR IRLSVPTAIQ LYDLQDRLGL SQPSKVIDWL LDVTKNDIDK LPPLQIPQGL  120
FGHQFHPSQM MLQSNAPTTS HHSLMTNSTS VDDHGDQDQS RYSWDLEAVS LMRANKGKEV  180
ERDHEDKIHQ EASSLSAHHH QKFYPGLFNN TSNNNAMPLN PYYHWEPSNL SLSQFGSGHD  240
FLSHQQAADQ NYAFYSNAAA AAASLSHHHH LFFCPPAASA TMPSLFPTYN NAPYVSNAQE  300
GTSHDQSPRQ MNHFQLLSSS SSSSSQSALH NNLLLPISSL AITSNSSQVK PFSLLNDESN  360
PHEKEDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1858112155Putative transcription factor PCF6
5zkt_B2e-1858112155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024042724.10.0transcription factor TCP17
TrEMBLA0A067FRC10.0A0A067FRC1_CITSI; Uncharacterized protein
STRINGXP_006440774.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-48TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5