PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g017694m | ||||||||
Common Name | CISIN_1g017694mg, LOC102620280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | HSF | ||||||||
Protein Properties | Length: 368aa MW: 41713.1 Da PI: 4.6483 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.5 | 1.4e-35 | 48 | 139 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl+k+ye+++d++++e++sws+ g sfvv+d++ f++++Lp++Fkhsnf+SFvRQLn+YgF+k++ ++ weF+++ F +g+++l orange1.1g017694m 48 FLTKTYEMVDDPNTNEVVSWSRGGVSFVVWDPHAFSTSLLPRHFKHSNFSSFVRQLNTYGFRKIDPDR---------WEFSNEGFLRGERHL 130 9****************************************************************999.........*************** PP XXXXXXXXX CS HSF_DNA-bind 94 lekikrkks 102 l++ikr+k orange1.1g017694m 131 LKNIKRRKA 139 ******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.36E-35 | 44 | 137 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 7.3E-39 | 44 | 137 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.5E-60 | 44 | 137 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 5.9E-32 | 48 | 137 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.6E-19 | 48 | 71 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.6E-19 | 86 | 98 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 87 | 111 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.6E-19 | 99 | 111 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MNPYYMIKEE QPGGIPSESG ADEAAVMTMM MAAPQPMEGL HDTGPPPFLT KTYEMVDDPN 60 TNEVVSWSRG GVSFVVWDPH AFSTSLLPRH FKHSNFSSFV RQLNTYGFRK IDPDRWEFSN 120 EGFLRGERHL LKNIKRRKAP SQPLPPPQAL GPCVELGRFG LDGEFERLIR DKQFLMMELV 180 KLRQQQQNTR AYLQAMELRL EGTEKKQQQM MSFLARAMQN PAFLQQLVQQ KEKRKELEEA 240 MTKKRRRPID QGPIGAGVAG SSDFGEGMSS VKAEPLEYGD YGFEMSELEA LALEMQGYGR 300 TRSEQEGPQE LEPPESGARE LDEGFWEELL NERFEGELDM PGSEVGDDED VTVLIDRFGY 360 LGSSPKQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 5e-24 | 46 | 137 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 5e-24 | 46 | 137 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 5e-24 | 46 | 137 | 27 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 136 | LKNIKRR |
2 | 232 | 246 | KRKELEEAMTKKRRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.10536 | 0.0 | fruit |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006479647.1 | 0.0 | heat stress transcription factor A-7a | ||||
Refseq | XP_006479648.1 | 0.0 | heat stress transcription factor A-7a | ||||
Refseq | XP_024044201.1 | 0.0 | heat stress transcription factor A-7a | ||||
Swissprot | Q9LUH8 | 1e-129 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | A0A067FZJ3 | 0.0 | A0A067FZJ3_CITSI; Uncharacterized protein | ||||
TrEMBL | V4TA97 | 0.0 | V4TA97_9ROSI; Uncharacterized protein | ||||
STRING | XP_006479647.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006443978.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1256 | 28 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-123 | heat shock transcription factor A6B |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g017694m |
Entrez Gene | 102620280 |