PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g017565m
Common NameCISIN_1g007940mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 370aa    MW: 40881.8 Da    PI: 5.6759
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g017565mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like38.92e-1211382855
            G2-like 28 tPktilelmkvkgLtlehvkSHLQkYRl 55
                        Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  orange1.1g017565m 11 GPKKILDLMNVPWLTRENVASHLQKYRL 38
                       5**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-131043IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-101038IPR006447Myb domain, plants
SuperFamilySSF466891.56E-61142IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MTCSVCLAEV GPKKILDLMN VPWLTRENVA SHLQKYRLYL TRLQKDELKT SVGGIKQKDS  60
PSKDSAASFG IQNSITVHHH NDVSNGGYRF SGSNSVVQNV DAKSLEGDVK GIDTIPVTGH  120
KRVLTVDIPN SHKARCSQIG FNGSFVPGHS DVNFTSFDSA IPTQPWSEVS ETQFQHEHKP  180
LRLENDFTQL PLPGPRHHIQ VDCIQSGPSA SSKPSVVDKD NLKPFDCTYK SNYPNAIPIG  240
SAVDTFPVQT TSPIVNHQPF EPIARTTSSM KSQGLNLSCI PDLEAAQRNI NWGVGSSLTS  300
LDEDLQLCWL QGDCFAMNLG LQDINFSEYN DPALNSEVPF HLYDTMRFDY EHYYDPTECP  360
IIDQGLFIA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006484016.10.0two-component response regulator ARR11 isoform X1
RefseqXP_006484017.10.0two-component response regulator ARR11 isoform X2
TrEMBLA0A067GTP80.0A0A067GTP8_CITSI; Uncharacterized protein
STRINGXP_006484017.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.12e-44response regulator 11