PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g017479m
Common NameCISIN_1g017479mg, LOC102613699
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 372aa    MW: 40911.6 Da    PI: 6.4543
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g017479mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.51.4e-33192250159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK vk+s++prsYYrCtsagC vkk+vers+edp++v++tYeg+H h+
  orange1.1g017479m 192 LDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHP 250
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-35177252IPR003657WRKY domain
SuperFamilySSF1182902.62E-29184252IPR003657WRKY domain
PROSITE profilePS5081133.27187252IPR003657WRKY domain
SMARTSM007744.0E-40192251IPR003657WRKY domain
PfamPF031067.6E-27193250IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MEKREAETSI SMANSTLLSD ENPAGGYGLG GIFDMSCEGD KWDAASFGFM DLLNVQNHNT  60
NYNNQDFGGD SFLFSNTLHP PPPAAAPILP PPPPQPSPAP ESSEVLNNPA TPNSSSISSS  120
SNEAAANNTN NEEQTDTNNN NNNNNNSSSK AGDDDEQEQD KTKKQLKPKK KNQKKQREPR  180
FAFMTKSDID HLDDGYRWRK YGQKAVKNSP HPRSYYRCTS AGCGVKKRVE RSSEDPTIVV  240
TTYEGQHIHP SPITPRGSIG IMANDHNSTA TFGASSSFVI PQPQYLQLHH QQQPYIYSSS  300
PPLNLITSNA TSTTANSSFN NPTFSSFVHH HQAERRNTMI SPSQASLFHD HGLLQDIVPS  360
QMRNEPKDEH I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-261852521077Probable WRKY transcription factor 4
2lex_A4e-261852521077Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.171570.0stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488824.10.0probable WRKY transcription factor 48
SwissprotQ9FGZ41e-62WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLA0A067G8Y40.0A0A067G8Y4_CITSI; Uncharacterized protein
STRINGXP_006488824.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56242648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.13e-49WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]