PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g017464m
Common NameCISIN_1g017464mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 372aa    MW: 42144.9 Da    PI: 8.5657
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g017464mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1023.8e-3266119255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        prlrWtp+LH rFv+ave+LGG+e+AtPk +l++m++kgL+++hvkSHLQ+YR+
  orange1.1g017464m  66 PRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRS 119
                        8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.57462122IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.2E-3062120IPR009057Homeodomain-like
SuperFamilySSF466893.4E-1464120IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-2366121IPR006447Myb domain, plants
PfamPF002491.6E-967118IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MEGSEGTECS KTCPNSSDEI PDDEGESEEN DDESSKPKNG GSSSNSTVEE NDKKPPVRPY  60
VRSKMPRLRW TPDLHLRFVN AVEKLGGQER ATPKLVLQMM DIKGLSIAHV KSHLQMYRSK  120
KIDDPGRAMA DHRHLVESGD RNIYNLSQLP MLQGYNNQSQ ASGFRYGEAS WSTAREYLMR  180
NPYVSRSLID ETRSRLYGTV AEKIFDGTNC NWPSNNNFRM STTSSALSYG ANSTWKMPEL  240
KEEIQTSFNR NRDPWQAQSR LRPIDLNPVR QQHTKIEEQK SATMKRKATD CGKLDLELSL  300
RLRPSSNEEE SRPPRQGSLE EKINKVDGEL SLSLYSPSSS SSKHRRLMKE GEDHSNKERA  360
TKRASTLDLT I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A7e-1767121357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-1767121357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-1767121357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-1767121357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429461.10.0putative Myb family transcription factor At1g14600
RefseqXP_006481085.10.0putative Myb family transcription factor At1g14600
TrEMBLA0A067F0P20.0A0A067F0P2_CITSI; Uncharacterized protein
STRINGXP_006481085.10.0(Citrus sinensis)
STRINGXP_006429461.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.19e-66G2-like family protein