PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g017409m | ||||||||
Common Name | CISIN_1g017348mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | GATA | ||||||||
Protein Properties | Length: 373aa MW: 40667 Da PI: 4.531 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.6 | 5.2e-16 | 225 | 261 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++ Tp +Rrgp g++tLCnaCGl+++ kg+ orange1.1g017409m 225 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 261 *******99*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 3.3E-7 | 85 | 120 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 13.117 | 85 | 120 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.8E-10 | 88 | 119 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 12.719 | 153 | 195 | IPR010402 | CCT domain |
Pfam | PF06203 | 7.5E-15 | 153 | 194 | IPR010402 | CCT domain |
SMART | SM00401 | 1.8E-10 | 219 | 272 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 8.59 | 219 | 276 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.76E-11 | 223 | 271 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.1E-14 | 223 | 266 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.36E-16 | 224 | 271 | No hit | No description |
Pfam | PF00320 | 7.3E-14 | 225 | 261 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 225 | 252 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MAAANPQPLQ ARPFEEHARA PPIQIEDEDG DYEDGEGMDD IDEGNINSIN IINNNNNNNN 60 TNNNSNISNN SSMVNVAEHG VVVAAASRTS ELTLSFEGEV YVFPAVTPEK VQAVLLLLGG 120 RDIPTGVPTI EVPYDQSNRG VVDTPKRSNL SRRIASLVRF REKRKERCFD KKIRYSVRKE 180 VAQRMHRKNG QFASLKESSG ASPWDSSQDG IQDGTPRPET VVRRCQHCGV SENNTPAMRR 240 GPAGPRTLCN ACGLMWANKG TLRDLSKGGR SLSMDQLEPE TPMDVKPSIM EGEFSGNQDE 300 LGTPEDPAKA VNQGSDNPSI DPDEEDMHGA AEDLTNSLPM GLVHSSADDD EQFLLVSVLT 360 SILSYQMASF VL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 147 | DTPKRS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.1088 | 1e-159 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006433794.1 | 0.0 | GATA transcription factor 24 isoform X1 | ||||
Refseq | XP_024039692.1 | 0.0 | GATA transcription factor 24 isoform X1 | ||||
Refseq | XP_024039693.1 | 0.0 | GATA transcription factor 24 isoform X1 | ||||
TrEMBL | A0A067H113 | 0.0 | A0A067H113_CITSI; Uncharacterized protein | ||||
STRING | XP_006433794.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 7e-73 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g017409m |