PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g017390m
Common NameCISIN_1g017390mg, LOC102630652
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 373aa    MW: 41198.5 Da    PI: 6.6858
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g017390mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17258292135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  orange1.1g017390m 258 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 292
                        99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.7E-7616349IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.558252288IPR000679Zinc finger, GATA-type
SMARTSM004015.5E-18252302IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-15253316No hitNo description
Gene3DG3DSA:3.30.50.101.2E-14253290IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.32E-13257304No hitNo description
PROSITE patternPS003440258283IPR000679Zinc finger, GATA-type
PfamPF003201.4E-15258292IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEVPEFFQGS YCAQFSAEKH HSLDSNKSSN GGDHFIVEEL LDFSNEDAIL TDAAAFDDVT  60
ANSTDSSTVT VVDSCNSSSF SGCGPNFPGE NNGCRNFSDA HFSGDLCVPY DDLAELEWLS  120
NIVEESFSCE DLQKLQLISG MKARSDHSSE TRQFQPGTNR IYHGSTNTSN NTNANPNNPV  180
FNPEMAVPAK ARSKRSRAAP CSWASRLLVL SPPESTSEPE IIPTGPPPPP LQGKKSVKAC  240
GSKKKDSGDE GNGEGRKCLH CATDKTPQWR TGPMGPKTLC NACGVRYKSG RLVPEYRPAS  300
SPTFVLTKHS NSHRKVLELR RQKELQRAQQ QQHQQQQFMH HHHHHQNMMF DLSNGDDYLI  360
HQHVGPDFRQ LI*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006476028.10.0GATA transcription factor 12
SwissprotP697816e-97GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A067GJP00.0A0A067GJP0_CITSI; GATA transcription factor
STRINGXP_006476028.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66252644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.19e-77GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]