PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g017166m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CO-like
Protein Properties Length: 377aa    MW: 40823.8 Da    PI: 6.4118
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g017166mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.21.2e-062258437
           zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                       + C++++   +  fC+ ++ +lC +C l +H +    H
  orange1.1g017166m 22 KPCDTCKAAAAAVFCRVDSAFLCLNCDLRIH-NcmnkH 58
                       68******99*********************.435556 PP
2zf-B_box261.9e-0861106342
           zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                         ++C+ +e+ ++   C+ +   lC +C   +H+       H++ p+
  orange1.1g017166m  61 VWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSAnplarrHERLPI 106
                        689*****************************66888888998876 PP
3CCT69.21.1e-23301345145
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                        Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k+ae
  orange1.1g017166m 301 REARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAE 345
                        9*****************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.2E-81963IPR000315B-box-type zinc finger
PROSITE profilePS5011910.311963IPR000315B-box-type zinc finger
CDDcd000211.29E-72363No hitNo description
PROSITE profilePS5011910.6859106IPR000315B-box-type zinc finger
PfamPF006431.0E-661106IPR000315B-box-type zinc finger
CDDcd000215.13E-862106No hitNo description
SMARTSM003362.7E-1064106IPR000315B-box-type zinc finger
PfamPF062039.2E-18301343IPR010402CCT domain
PROSITE profilePS5101716.559301343IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MPMGIELHSV KVISGGWSVA AKPCDTCKAA AAAVFCRVDS AFLCLNCDLR IHNCMNKHAR  60
VWMCEVCEQA PAAVTCKADA AALCVTCDND IHSANPLARR HERLPIEPFF DSADSIVKSS  120
AFNFLVPSDQ NGGSEFTGAS EHDGVDSASW LIPNSKPGIE NAGEMKSGDM FFIDPFIDLN  180
DFDYPNSFQN HHSAGMDSVV PVQTTKPEPI PAQAAAPIPL INNENCFDID FCRSKLSSFN  240
YQSQSVSSSS LDVGVVPDGN SMSDISYTFG RNMSTGSGAD PSVTVSAPGA NQASQLCGID  300
REARVLRYRE KRKNRKFEKT IRYHSRKAYA ETRPRIKGRF AKRAEADSEV DRLYKSAASA  360
AGAYLADSQY GVVPSF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.44200.0flower| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006474138.10.0zinc finger protein CONSTANS-LIKE 5
RefseqXP_024033868.10.0zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH81e-122COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLV4U1K50.0V4U1K5_9ROSI; Uncharacterized protein
STRINGXP_006453443.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78992435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-115CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]