PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g017062m
Common NameCISIN_1g011370mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 379aa    MW: 41830.3 Da    PI: 5.4287
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g017062mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.7e-12198240754
                        HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  orange1.1g017062m 198 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 240
                        79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.682191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-17194259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-9197240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.81E-13198244No hitNo description
Gene3DG3DSA:4.10.280.109.0E-16198253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.02E-7307348No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MVLEPNGAVW MEGEEEQPLS VSWTTAAAAT ATTTARATTE PKEDEMHVNA VSLSGFKSIL  60
DTDWFLNSTL NNPPQDFTNT TGLLETHQEL RAFNAFQETN LFFQPIESHP FTLNPTHSLL  120
PPNNNDNNSN SHLPFVSGFD LGGEAAGFIQ PASGFMGLTT TQICATNDSD FHGFGSSYSN  180
CFDNLEGKRK GLPAKNLMAE RRRRKKLNDR LYMLRSVVPK ISKMDRASIL GDAIDYLKEL  240
LQRINDLHNE LESTPTGSLM QPSTSIQPMT PTPPTLPCRV KEEISRSPTG EAARVEVRIR  300
EGRAVNIHMF CARRPGLLLS TMRALDSLGL DIQQAVISCF NGFALDVFRA EQCREGQDVL  360
PKQIKSVLLD TAGFHDVM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187205KRKGLPAKNLMAERRRRKK
2199206ERRRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.52460.0callus
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5126450.0JX512645.1 Citrus trifoliata bHLH mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446948.11e-113transcription factor ICE1
RefseqXP_006446949.11e-113transcription factor ICE1
RefseqXP_006468882.11e-113transcription factor ICE1
TrEMBLA0A067DWY90.0A0A067DWY9_CITSI; Uncharacterized protein
STRINGXP_006468882.11e-112(Citrus sinensis)
STRINGXP_006446948.11e-112(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-105bHLH family protein