PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g016972m
Common NameCISIN_1g016972mg, LOC102611502
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ZF-HD
Protein Properties Length: 380aa    MW: 41253.8 Da    PI: 7.7101
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g016972mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer111.64.1e-3571128359
        ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                         v+YkeClkNhAas+Ggha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre+++
  orange1.1g016972m  71 VVTYKECLKNHAASIGGHALDGCGEFMPSPTATpSDPTSLKCAACGCHRNFHRREPDQ 128
                        589******************************9*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.3E-2972126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-1972133IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.9E-3273125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.22574125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE patternPS000280112134IPR007087Zinc finger, C2H2
SuperFamilySSF466893.72E-19222294IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-29223294IPR009057Homeodomain-like
TIGRFAMsTIGR015653.5E-26233289IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MDITPTNNNT LNTNTNSKSP ETDTTDNHQT GATRIHSAKP LTFTNGVLKR HQPQPQHHQR  60
HHHHHHHHPI VVTYKECLKN HAASIGGHAL DGCGEFMPSP TATPSDPTSL KCAACGCHRN  120
FHRREPDQDH HLPHVPTTAT TATIEYQPHH RHHPPPPVTQ PPSRRSPSSA SPPPISSSYY  180
PSAPHMLLAL SGNLQQSSAA AAVPQENHHI SNNHHHNNNN IMMSNSGGSS GGRKRFRTKF  240
SQSQKEKMFE FAERVGWKMQ KRDDDLVHEF CNEVGVDRTV LKVWMHNNKS TFAKRDLNGA  300
GGSGSGSAGG GIGRINLDDD NTGNDNINNS KSGDGDDQDE EEGINNNNNG VRNLNHQFGS  360
ATESAAHVAN ANGGSSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A8e-212342911875ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.117670.0flower
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00387DAPTransfer from AT3G28920Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006482594.10.0zinc-finger homeodomain protein 9
TrEMBLA0A067FYZ30.0A0A067FYZ3_CITSI; Uncharacterized protein
STRINGXP_006482594.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.11e-64homeobox protein 34