PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g016887m | ||||||||
Common Name | CISIN_1g016887mg, LOC102622694 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | HB-other | ||||||||
Protein Properties | Length: 382aa MW: 41496.8 Da PI: 7.9017 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 21.6 | 3.8e-07 | 13 | 74 | 6 | 55 |
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 +f++ +++e+e ++ n ps+e LA+k ++ +qV +WFqNrR+ orange1.1g016887m 13 RFNPAEVTEMEGILQEhhNAMPSREILVALAEKFsesperkgkiMVQMKQVWNWFQNRRYAI 74 588888999999999766888*********************999**************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.87E-11 | 4 | 75 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.3E-4 | 7 | 81 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-8 | 13 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.76E-6 | 13 | 75 | No hit | No description |
Pfam | PF00046 | 1.1E-4 | 13 | 74 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 9.685 | 13 | 77 | IPR001356 | Homeobox domain |
Pfam | PF16719 | 7.6E-41 | 143 | 269 | IPR032001 | SAWADEE domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MGRPPSNGGP AFRFNPAEVT EMEGILQEHH NAMPSREILV ALAEKFSESP ERKGKIMVQM 60 KQVWNWFQNR RYAIRAKSIK SPGKLNVTPL ARDDSTPGRN VPQPVAAPIP IPMSASVPPT 120 MPASANVPSV STAGRAASES TFMEFEAKSA RDGAWYDVSA FLAQRNFDTA DPEVQVRFAG 180 FGAEEDEWVN IKRHVRQRSL PCEASECVAV LPGDLILCFQ EGKDQALYFD AHVLDAQRRR 240 HDVRGCRCRF LVRYDHDQSE EIVPLRKVCR RPETDYRLQQ LHAMNDSVMV DHQKTSADLS 300 ASTATRVTVS SAEMMHKQVN ANIAQGAPLS HSFVSVPAQT VEPKNASASS GISSSNPAVP 360 PGGAAVISGT AATTAATGHP S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iuq_A | 3e-47 | 143 | 273 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 3e-47 | 143 | 273 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 3e-47 | 143 | 273 | 4 | 134 | SHH1 SAWADEE |
4iur_B | 3e-47 | 143 | 273 | 4 | 134 | SHH1 SAWADEE |
4iut_A | 3e-47 | 143 | 273 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 3e-47 | 143 | 273 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 3e-47 | 143 | 273 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 3e-47 | 143 | 273 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 3e-47 | 143 | 273 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 3e-47 | 143 | 273 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.8318 | 0.0 | callus| flower |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006451761.1 | 0.0 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
Refseq | XP_006464825.1 | 0.0 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 | ||||
Swissprot | Q8RWJ7 | 1e-153 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | A0A067F5M3 | 0.0 | A0A067F5M3_CITSI; Uncharacterized protein | ||||
TrEMBL | V4UR89 | 0.0 | V4UR89_9ROSI; Uncharacterized protein | ||||
STRING | XP_006464825.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006451761.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7399 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.1 | 1e-136 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g016887m |
Entrez Gene | 102622694 |