PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g016828m
Common NameCISIN_1g016091mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HSF
Protein Properties Length: 383aa    MW: 42624.4 Da    PI: 4.7367
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g016828mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.23.6e-35491402102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+ye++ed +++ ++sws++ nsf+v+d+++f++++LpkyFkhsnf+SF+RQLn+YgF+kv+ ++         weF+++ F  g+k+l
  orange1.1g016828m  49 FLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQKHL 131
                        9********************999*****************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++ikr+++
  orange1.1g016828m 132 LKTIKRRRH 140
                        ******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.86E-3345138IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.1E-6145138IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.0E-3745138IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.0E-194972IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.5E-3149138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-198799IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434088112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-19100112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MEGVRVKEEE TVTYAATTAT AASASSSSSS SNFMPQPLEG LHDAGPPPFL TKTYEMVEDL  60
STDAIVSWSR TRNSFIVWDS HQFSTTLLPK YFKHSNFSSF IRQLNTYGFR KVDPDRWEFA  120
NEGFLGGQKH LLKTIKRRRH VSQSMQQRGG EACLEVGQYG LDGELERLKR DRNVLMAEIV  180
RLRQHQQQSR DQLSAMEDRL LSTEKKQQQM MTFLAKALKN PSFFQQLAQS NAHRRELGGV  240
QTGRKRRLTA TPSMENLQET ISVAPVGLDC GPVVDYTVQD QNELTSMETE IETFLSSPVD  300
NESSSDIDNP NAGSVPAPSG GNFSSVNETI WEDFMADDLI AGDPEEVVVK DQSEAEVELE  360
DLVATPTDWG GLQKKGGVST RD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-264413821129Heat shock factor protein 1
5d5v_B8e-264413821129Heat shock factor protein 1
5d5v_D8e-264413821129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131137LKTIKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.37320.0callus| flower| fruit| stem
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450864.10.0heat shock factor protein HSF30
RefseqXP_006450865.10.0heat shock factor protein HSF30
RefseqXP_006475902.10.0heat shock factor protein HSF30
RefseqXP_024953000.10.0heat shock factor protein HSF30
SwissprotP411521e-132HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A067GXG80.0A0A067GXG8_CITSI; Uncharacterized protein
STRINGXP_006475902.10.0(Citrus sinensis)
STRINGXP_006450864.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-123heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]