PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g016735m

Common Name

CISIN_1g011169mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Dof

Protein Properties

Length: 384aa MW: 41268.3 Da PI: 6.627

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g016735m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	104.1	7.9e-33	1	48	14	61
zf-Dof 14 tntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ orange1.1g016735m 1 MDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHF 48 69********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	24.344	1	47	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-21	1	46	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.2E-25	1	47	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MDTKFCYFNN YNVNQPRHFC KNCQRYWTAG GTMRNVPVGA GRRKNKHFAS QYRQILVSSD 60 GVPVTGLETP NSANQQLMLC GDSATTFRPS TGNGTVLKFG PETPLCESME NVLNLRDQKR 120 SVEICTVTCV ENKEEPSSSG SPVTASSIRG NELPESVMQK EQVMMTGSCN ELNMQQSMHC 180 YPVSPWGVPW NPNNVASMEA AQNPSDRVCV PNGSNPGPVQ WCPTTVLAVP GFCAPNIPLQ 240 FVPASYWGMG VWAAGAGNIP LTGSNGCLSP SSSTSNNSCC SGNGSPTLGK HSRDPNLTDE 300 GQSEKCVLVP KTLRIDDPDE ASRSPIWATL GFKPDQKDLK SGGAIFKDFE TKKGGKADVL 360 DGAEILESNP AALSRSHTFQ EST*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MDTKFCYFNN YNVNQPRHFC KNCQRYWTAG GTMRNVPVGA GRRKNKHFAS QYRQILVSSD  60
GVPVTGLETP NSANQQLMLC GDSATTFRPS TGNGTVLKFG PETPLCESME NVLNLRDQKR  120
SVEICTVTCV ENKEEPSSSG SPVTASSIRG NELPESVMQK EQVMMTGSCN ELNMQQSMHC  180
YPVSPWGVPW NPNNVASMEA AQNPSDRVCV PNGSNPGPVQ WCPTTVLAVP GFCAPNIPLQ  240
FVPASYWGMG VWAAGAGNIP LTGSNGCLSP SSSTSNNSCC SGNGSPTLGK HSRDPNLTDE  300
GQSEKCVLVP KTLRIDDPDE ASRSPIWATL GFKPDQKDLK SGGAIFKDFE TKKGGKADVL  360
DGAEILESNP AALSRSHTFQ EST*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006443525.1	0.0	cyclic dof factor 3
Refseq	XP_006479196.1	0.0	cyclic dof factor 3-like
TrEMBL	A0A067FF52	0.0	A0A067FF52_CITSI; Uncharacterized protein
TrEMBL	A0A067FF98	0.0	A0A067FF98_CITSI; Uncharacterized protein
STRING	XP_006479196.1	0.0	(Citrus sinensis)
STRING	XP_006443525.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	6e-33	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	orange1.1g016735m