PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g016701m | ||||||||
Common Name | CISIN_1g016091mg, LOC102620157 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | HSF | ||||||||
Protein Properties | Length: 385aa MW: 43087.9 Da PI: 4.5295 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.1 | 3.7e-35 | 49 | 140 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl+k+ye++ed +++ ++sws++ nsf+v+d+++f++++LpkyFkhsnf+SF+RQLn+YgF+kv+ ++ weF+++ F g+k+l orange1.1g016701m 49 FLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQKHL 131 9********************999*****************************************999.........*************** PP XXXXXXXXX CS HSF_DNA-bind 94 lekikrkks 102 l++ikr+++ orange1.1g016701m 132 LKTIKRRRH 140 ******975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.0E-37 | 45 | 138 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.99E-33 | 45 | 138 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 8.1E-61 | 45 | 138 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 4.5E-31 | 49 | 138 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.0E-19 | 49 | 72 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.0E-19 | 87 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 88 | 112 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.0E-19 | 100 | 112 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0034620 | Biological Process | cellular response to unfolded protein | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071456 | Biological Process | cellular response to hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MEGVRVKEEE TVTYAATTAT AASASSSSSS SNFMPQPLEG LHDAGPPPFL TKTYEMVEDL 60 STDAIVSWSR TRNSFIVWDS HQFSTTLLPK YFKHSNFSSF IRQLNTYGFR KVDPDRWEFA 120 NEGFLGGQKH LLKTIKRRRH VSQSMQQRGG EACLEVGQYG LDGELERLKR DRNVLMAEIV 180 RLRQHQQQSR DQLSAMEDRL LSTEKKQQQM MTFLAKALKN PSFFQQLAQS NAHRRELGGV 240 QTGRKRRLTA TPSMENLQET ISVAPVGLDC GPVVDYTVQD QNELTSMETE IETFLSSPVD 300 NESSSDIDNP NAGSVPAPSG GNFSSVNETI WEDFMADDLI AGDPEEVVVK DQSEAEVELE 360 DLVATPTDWG EELQDLVDQM GYLR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 8e-26 | 44 | 138 | 12 | 120 | Heat shock factor protein 1 |
5d5u_B | 1e-25 | 44 | 138 | 21 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-25 | 44 | 138 | 21 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-25 | 44 | 138 | 21 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 137 | LKTIKRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.3732 | 0.0 | callus| flower| fruit| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006450864.1 | 0.0 | heat shock factor protein HSF30 | ||||
Refseq | XP_006450865.1 | 0.0 | heat shock factor protein HSF30 | ||||
Refseq | XP_006475902.1 | 0.0 | heat shock factor protein HSF30 | ||||
Refseq | XP_024953000.1 | 0.0 | heat shock factor protein HSF30 | ||||
Swissprot | P41152 | 1e-141 | HSF30_SOLPE; Heat shock factor protein HSF30 | ||||
TrEMBL | A0A067GXU9 | 0.0 | A0A067GXU9_CITSI; Uncharacterized protein | ||||
TrEMBL | V4WCE0 | 0.0 | V4WCE0_9ROSI; Uncharacterized protein | ||||
STRING | XP_006475902.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006450864.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 1e-128 | heat shock transcription factor A2 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g016701m |
Entrez Gene | 102620157 |
Publications ? help Back to Top | |||
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