PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g016638m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 386aa    MW: 42372.2 Da    PI: 7.404
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g016638mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.4e-11318363655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +++Er RR ri +++ +L++l P+     +k  + ae+L +Ave+Ik+Lq
  orange1.1g016638m 318 SIAERVRRTRISERMRKLQDLFPNM----DKQTNTAEMLDLAVEHIKDLQ 363
                        689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.215312362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-14315373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.37E-11316367No hitNo description
Gene3DG3DSA:4.10.280.103.2E-13317373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-10318368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-7318363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MSLLYTPNFK YPEGDLRKNQ EFMDSSAHYD QQNDQLSDSS LTRYRSAPSS FLESLVNGNS  60
GGGNCEDYRC FRPSSPEIDN FLAKYMLPCN GSGDSGSHAS QEFGVKAMKQ EEPEPITEQN  120
EYSNGSSQMV YQNLPVHSVG NDISVNVGNA MDNSYGVASS MALENSMQER MATGNGSNLT  180
RQNSSPAGLF SNLGVDNGFA GMRNGGCFRA CNGTNLEAST SASRLINRVN LSPGDPWDDA  240
SFSGVKRARD STCNMSFGLD AYETQNGNSG NQSTRLVHHL SLPKTSAEMA AVEKFLHFQG  300
SVPCKIRAKR GCATHPRSIA ERVRRTRISE RMRKLQDLFP NMDKQTNTAE MLDLAVEHIK  360
DLQKQVKLLT DNKAKCMCPN KQKLC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.37530.0flower| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006482911.10.0transcription factor bHLH130-like
RefseqXP_006482912.10.0transcription factor bHLH130-like
TrEMBLA0A2H5N9Q10.0A0A2H5N9Q1_CITUN; Uncharacterized protein
STRINGXP_006482911.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1673789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.16e-70bHLH family protein